Intermediate tunnelling–hopping regime in DNA charge transport (original) (raw)

References

  1. Wallace, S. S. Biological consequences of free radical-damaged DNA bases. Free Radic. Bio. Med. 33, 1–14 (2002).
    CAS Google Scholar
  2. Kawanishi, S., Hiraku, Y. & Oikawa, S. Mechanism of guanine-specific DNA damage by oxidative stress and its role in carcinogenesis and aging. Mutat. Res. Rev. Mutat. 488, 65–76 (2001).
    CAS Google Scholar
  3. Murphy, C. J. et al. Long-range photoinduced electron-transfer through a DNA helix. Science 262, 1025–1029 (1993).
    CAS PubMed Google Scholar
  4. Giese, B. Long-distance charge transport in DNA: the hopping mechanism. Acc. Chem. Res. 33, 631–636 (2000).
    CAS PubMed Google Scholar
  5. Seeman, N. C. Nanomaterials based on DNA. Annu. Rev. Biochem. 79, 65–87 (2010).
    CAS PubMed PubMed Central Google Scholar
  6. Lewis, F. D. et al. Distance-dependent electron transfer in DNA hairpins. Science 277, 673–676 (1997).
    CAS PubMed Google Scholar
  7. Kelley, S. O., Jackson, N. M., Hill, M. G. & Barton, J. K. Long-range electron transfer through DNA films. Angew. Chem. Int. Ed. 38, 941–945 (1999).
    CAS Google Scholar
  8. Porath, D., Bezryadin, A., de Vries, S. & Dekker, C. Direct measurement of electrical transport through DNA molecules. Nature 403, 635–638 (2000).
    CAS PubMed Google Scholar
  9. Fink, H.-W. & Schonenberger, C. Electrical conduction through DNA molecules. Nature 398, 407–410 (1999).
    CAS PubMed Google Scholar
  10. Xu, B. Q. et al. Direct conductance measurement of single DNA molecules in aqueous solution. Nano. Lett. 4, 1105–1108 (2004).
    CAS Google Scholar
  11. Kawai, K. & Majima, T. Hole transfer kinetics of DNA. Acc. Chem. Res. 46, 2616–2625 (2013).
    CAS PubMed Google Scholar
  12. Giese, B., Amaudrut, J., Kohler, A-K., Spormann, M. & Wessely, S. Direct observation of hole transfer through DNA by hopping between adenine bases and by tunnelling. Nature 412, 318–320 (2001).
    CAS PubMed Google Scholar
  13. Zalinge, H., Schiffrin, D. J., Bates, A. D., Straikov, E. B., Wenzel, W. & Nichols, R. J. Variable-temperature measurements of the single-molecule conductance of double-stranded DNA. Angew. Chem. Int. Ed. 45, 5499–5502 (2006).
    Google Scholar
  14. de Pablo, P. J. et al. Absence of dc-conductivity in λ-DNA. Phys. Rev. Lett. 85, 4992–4995 (2000).
    CAS PubMed Google Scholar
  15. Risser, S. M., Beratan, D. N. & Meade, T. J. Electron transfer in DNA: predictions of exponential growth and decay of coupling with donor–acceptor distance. J. Am. Chem. Soc. 115, 2508–2510 (1993).
    CAS Google Scholar
  16. Jortner, J., Bixon, M., Langenbacher, T. & Michel-Beyerle, M. E. Charge transfer and transport in DNA. Proc. Natl Acad. Sci. USA 95, 12759–12765 (1998).
    CAS PubMed Google Scholar
  17. Conwell, E. M. Charge transport in DNA in solution: the role of polarons. Proc. Natl Acad. Sci. USA 102, 8795–8799 (2005).
    CAS PubMed Google Scholar
  18. Renaud, N., Berlin, Y. A., Lewis, F. D. & Ratner, M. A. Between superexchange and hopping: an intermediate charge-transfer mechanism in poly(A)-poly(T) DNA hairpins. J. Am. Chem. Soc. 135, 3953–3963 (2013).
    CAS PubMed Google Scholar
  19. Grib, N. V., Ryndyk, D. A., Gutiérrez, R. & Cuniberti, G. Distance-dependent coherent charge transport in DNA: crossover from tunneling to free propagation. J. Biophys. Chem. 1, 77–85 (2010).
    CAS Google Scholar
  20. Zhang, Y., Liu, C., Balaeff, A., Skourtis, S. S. & Beratan, D. N. A flickering resonance mechanism for biological charge transfer. Proc. Natl Acad. Sci. USA 111, 10049–10054 (2014).
    CAS PubMed Google Scholar
  21. Genereux, J. C. & Barton, J. K. Mechanisms for DNA charge transport. Chem. Rev. 110, 1642–1662 (2009).
    Google Scholar
  22. Voityuk, A. A., Rösch, N., Bixon, M. & Jortner, J. Electronic coupling for charge transfer and transport in DNA. J. Phys. Chem. B 104, 9740–9745 (2000).
    CAS Google Scholar
  23. Šponer, J., Leszczyński, J. & Hobza, P. Nature of nucleic acid–base stacking: nonempirical ab initio and empirical potential characterization of 10 stacked base dimers. Comparison of stacked and H-bonded base pairs. J. Phys. Chem. 100, 5590–5596 (1996).
    Google Scholar
  24. Smit, R. H. M., Untiedt, C., Rubio-Bollinger, G., Segers, R. C. & van Ruitenbeek, J. M. Observation of a parity oscillation in the conductance of atomic wires. Phys. Rev. Lett. 91, 076805 (2003).
    CAS PubMed Google Scholar
  25. Tada, T., Nozaki, D., Kondo, M., Hamayama, S. & Yoshizawa, K. Oscillation of conductance in molecular junctions of carbon ladder compounds. J. Am. Chem. Soc. 126, 14182–14189 (2004).
    CAS PubMed Google Scholar
  26. Büttiker, M. Coherent and sequential tunneling in series barriers. IBM J. Res. Dev. 32, 63–75 (1988).
    Google Scholar
  27. Hush, N. S. & Cheung, A. S. Ionization potentials and donor properties of nucleic acid bases and related compounds. Chem. Phys. Lett. 34, 11–13 (1975).
    CAS Google Scholar
  28. Di Felice, R., Calzolari, A., Molinari, E. & Garbesi, A. Ab initio study of model guanine assemblies: the role of coupling and band transport. Phys. Rev. B 65, 045104 (2001).
    Google Scholar
  29. Saito, I. et al. Photoinduced DNA cleavage via electron transfer: demonstration that guanine residues located 5′ to guanine are the most electron-donating sites. J. Am. Chem. Soc. 117, 6406–6407 (1995).
    CAS Google Scholar
  30. Berlin, Y. A., Burin, A. L. & Ratner, M. A. Charge hopping in DNA. J. Am. Chem. Soc. 123, 260–268 (2000).
    Google Scholar
  31. Liu, T. & Barton, J. K. DNA electrochemistry through the base pairs not the sugar–phosphate backbone. J. Am. Chem. Soc. 127, 10160–10161 (2005).
    CAS PubMed Google Scholar
  32. Venkataraman, L. et al. Single-molecule circuits with well-defined molecular conductance. Nano. Lett. 6, 458–462 (2006).
    CAS PubMed Google Scholar
  33. Xu, B. & Tao, N. J. Measurement of single-molecule resistance by repeated formation of molecular junctions. Science 301, 1221–1223 (2003).
    CAS Google Scholar
  34. Haiss, W. et al. Redox state dependence of single molecule conductivity. J. Am. Chem. Soc. 125, 15294–15295 (2003).
    CAS PubMed Google Scholar
  35. McCreery, R. Molecular electronic junctions. Chem. Mater. 16, 4477–4496 (2004).
    CAS Google Scholar
  36. Luo, L., Choi, S. H. & Frisbie, C. D. Probing hopping conduction in conjugated molecular wires connected to metal electrodes. Chem. Mater. 23, 631–645 (2011).
    CAS Google Scholar
  37. Segal, D., Nitzan, A., Ratner, M. & Davis, W. B. Activated conduction in microscopic molecular junctions. J. Phys. Chem. B 104, 2790–2793 (2000).
    CAS Google Scholar
  38. Nitzan, A. The relationship between electron transfer rate and molecular conduction 2. The sequential hopping case. Isr. J. Chem. 42, 163–166 (2002).
    CAS Google Scholar
  39. O'Neil, M. A. & Barton, J. K. DNA charge transport: conformationally gated hopping through stacked domains. J. Am. Chem. Soc. 126, 11471–11483 (2004).
    Google Scholar
  40. Venkatramani, R. et al. Evidence for a near-resonant charge transfer mechanism for double-stranded peptide nucleic acid. J. Am. Chem. Soc. 133, 62–72 (2010).
    PubMed Google Scholar
  41. Yu, Z. G. & Song, X. Variable range hopping and electrical conductivity along the DNA double helix. Phys. Rev. Lett. 86, 6018–6021 (2001).
    CAS PubMed Google Scholar
  42. Renger, T. & Marcus, R. A. Variable-range hopping electron transfer through disordered bridge states: application to DNA. J. Phys. Chem. A 107, 8404–8419 (2003).
    CAS Google Scholar
  43. Bende, A., Bogár, F. & Ladik, J. Hole mobilities of periodic models of DNA double helices in the nucleosomes at different temperatures. Chem. Phys. Lett. 565, 128–131 (2013).
    CAS Google Scholar
  44. Lewis, F. D., Zhu, H., Daublain, P., Cohen, B. & Wasielewski, M. R. Hole mobility in DNA A tracts. Angew. Chem. Int. Ed. 45, 7982–7985 (2006).
    CAS Google Scholar
  45. Jortner, J., Bixon, M., Voityuk, A. A. & Rösch, N. Superexchange mediated charge hopping in DNA. J. Phys. Chem. A 106, 7599–7606 (2002).
    CAS Google Scholar
  46. Chen, W. et al. Highly conducting π-conjugated molecular junctions covalently bonded to gold electrodes. J. Am. Chem. Soc. 133, 17160–17163 (2011).
    CAS Google Scholar
  47. Guo, S., Hihath, J., Díez-Pérez, I. & Tao, N. Measurement and statistical analysis of single-molecule current–voltage characteristics, transition voltage spectroscopy, and tunneling barrier height. J. Am. Chem. Soc. 133, 19189–19197 (2011).
    CAS PubMed Google Scholar
  48. Berlin, Y. A., Voityuk, A. A. & Ratner, M. A. DNA base pair stacks with high electric conductance: a systematic structural search. ACS Nano 6, 8216–8225 (2012).
    CAS PubMed Google Scholar

Download references