Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing (original) (raw)
References
Cimbora, D.M. & Groudine, M. The control of mammalian DNA replication: a brief history of space and timing. Cell104, 643–646 (2001). CASPubMed Google Scholar
Raghuraman, M.K. et al. Replication dynamics of the yeast genome. Science294, 115–121 (2001). ArticleCAS Google Scholar
Ahmad, K. & Henikoff, S. Centromeres are specialized replication domains in heterochromatin. J. Cell. Biol.153, 101–110 (2001). ArticleCAS Google Scholar
Dolfini, S., Courgeon, A.M. & Tiepolo, L. The cell cycle of an established line of Drosophila melanogaster cells in vitro. Experientia26, 1020–1021 (1970). ArticleCAS Google Scholar
Hansen, R.S., Canfield, T.K., Lamb, M.M., Gartler, S.M. & Laird, C.D. Association of fragile X syndrome with delayed replication of the FMR1 gene. Cell73, 1403–1409 (1993). ArticleCAS Google Scholar
Rubin, G.M. et al. A Drosophila complementary DNA resource. Science287, 2222–2224 (2000). ArticleCAS Google Scholar
Cleveland, W.S. & Devlin, S.J. Locally-weighted regression: an approach to regression analysis by local fitting. J. Amer. Statist. Assoc.83, 596–610 (1988). Article Google Scholar
Gilbert, D.M. Replication timing and transcriptional control: beyond cause and effect. Curr. Opin. Cell Biol.14, 377–383 (2002). ArticleCAS Google Scholar
Sullivan, B. & Karpen, G. Centromere identity in Drosophila is not determined in vivo by replication timing. J. Cell. Biol.154, 683–690 (2001). ArticleCAS Google Scholar
Caizzi, R., Caggese, C. & Pimpinelli, S. Bari-1, a new transposon-like family in Drosophila melanogaster with a unique heterochromatic organization. Genetics133, 335–345 (1993). CASPubMedPubMed Central Google Scholar
Jakubczak, J.L., Zenni, M.K., Woodruff, R.C. & Eickbush, T.H. Turnover of R1 (type I) and R2 (type II) retrotransposable elements in the ribosomal DNA of Drosophila melanogaster. Genetics131, 129–142 (1992). CASPubMedPubMed Central Google Scholar
Wakimoto, B.T. & Hearn, M.G. The effects of chromosome rearrangements on the expression of heterochromatic genes in chromosome 2L of Drosophila melanogaster. Genetics125, 141–154 (1990). CASPubMedPubMed Central Google Scholar
Eberl, D.F., Duyf, B.J. & Hilliker, A.J. The role of heterochromatin in the expression of a heterochromatic gene, the rolled locus of Drosophila melanogaster. Genetics134, 277–292 (1993). CASPubMedPubMed Central Google Scholar
Hatton, K.S. et al. Replication program of active and inactive multigene families in mammalian cells. Mol. Cell. Biol.8, 2149–2158 (1988). ArticleCAS Google Scholar
Cimbora, D.M. et al. Long-distance control of origin choice and replication timing in the human β-globin locus are independent of the locus control region. Mol. Cell. Biol.20, 5581–5591 (2000). ArticleCAS Google Scholar
Hansen, R.S., Canfield, T.K. & Gartler, S.M. Reverse replication timing for the XIST gene in human fibroblasts. Hum. Mol. Genet.4, 813–820 (1995). ArticleCAS Google Scholar
Smith, Z.E. & Higgs, D.R. The pattern of replication at a human telomeric region (16p13.3): its relationship to chromosome structure and gene expression. Hum. Mol. Genet.8, 1373–1386 (1999). ArticleCAS Google Scholar
Kennedy, B.K., Barbie, D.A., Classon, M., Dyson, N. & Harlow, E. Nuclear organization of DNA replication in primary mammalian cells. Genes. Dev.14, 2855–2868 (2000). ArticleCAS Google Scholar
DePamphilis, M.L. Replication origins in metazoan chromosomes: fact or fiction? Bioessays21, 5–16 (1999). ArticleCAS Google Scholar
van Steensel, B., Delrow, J. & Henikoff, S. Chromatin profiling using targeted DNA adenine methyltransferase. Nat. Genet.27, 304–308 (2001). ArticleCAS Google Scholar
Lieb, J.D., Liu, X., Botstein, D. & Brown, P.O. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein–DNA association. Nat. Genet.28, 327–334 (2001). ArticleCAS Google Scholar
Kooperberg, C., Fazzio, T.G., Delrow, J. & Tsukiyama, T. Improved background correction for spotted DNA microarrays. J. Comput. Biol.9, 55–66 (2002). ArticleCAS Google Scholar
Yang, Y.H., Dudoit, S., Luu, P. & Speed, T.P. Normalization for cDNA microarrays data. in Microarrays: Optical Technologies and Informatics (eds Bittner, M.L., Chen, Y., Dorsel, A.N. and Dougherty, E.R.) (International Society for Optical Engineering, San Jose, California, 2001). Google Scholar
Pritchard, C.C., Hsu, L., Delrow, J. & Nelson, P.S. Project normal: defining normal variance in mouse gene expression. Proc. Natl Acad. Sci. USA98, 13266–13271 (2001). ArticleCAS Google Scholar
Fan, J. & Gijbels, I. Local Polynomial Modelling and its Applications (Chapman-Hall, London, 1996). Google Scholar