Mutant chromatin remodeling protein SMARCAL1 causes Schimke immuno-osseous dysplasia (original) (raw)

Accession codes

Accessions

GenBank/EMBL/DDBJ

References

  1. Boerkoel, C.F. et al. Manifestations and treatment of Schimke immuno-osseous dysplasia: 14 new cases and a review of the literature. Eur. J. Pediatr. 159, 1–7 (2000).
    Article CAS Google Scholar
  2. Spranger, J. et al. Schimke immuno-osseous dysplasia: a newly recognized multisystem disease. J. Pediatr. 119, 64–72 (1991).
    Article CAS Google Scholar
  3. Schimke, R.N., Horton, W.A. & King, C.R. Chondroitin-6-sulfaturia, defective cellular immunity, and nephrotic syndrome. Lancet 2, 1088–1089 (1971).
    Article CAS Google Scholar
  4. Saraiva, J.M. et al. Schimke immuno-osseous dysplasia: case report and review of 25 patients. J. Med. Genet. 36, 786–789 (1999).
    Article CAS Google Scholar
  5. Coleman, M.A., Eisen, J.A. & Mohrenweiser, H.W. Cloning and characterization of HARP/SMARCAL1: a prokaryotic HepA-related SNF2 helicase protein from human and mouse. Genomics 65, 274–282 (2000).
    Article CAS Google Scholar
  6. Havas, K., Whitehouse, I. & Owen-Hughes, T. ATP-dependent chromatin remodeling activities. Cell. Mol. Life Sci. 58, 673–682 (2001).
    Article CAS Google Scholar
  7. Pazin, M.J. & Kadonaga, J.T. SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein–DNA interactions? Cell 88, 737–740 (1997).
    Article CAS Google Scholar
  8. Koonin, E.V. A common set of conserved motifs in a vast variety of putative nucleic acid–dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. Nucleic Acids Res. 21, 2541–2547 (1993).
    Article CAS Google Scholar
  9. Gorbalenya, A.E., Koonin, E.V., Donchenko, A.P. & Blinov, V.M. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res. 17, 4713–4730 (1989).
    Article CAS Google Scholar
  10. Hall, M.C. & Matson, S.W. Helicase motifs: the engine that powers DNA unwinding. Mol. Microbiol. 34, 867–877 (1999).
    Article CAS Google Scholar
  11. Troelstra, C. et al. ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes. Cell 71, 939–953 (1992).
    Article CAS Google Scholar
  12. Gibbons, R.J., Picketts, D.J., Villard, L. & Higgs, D.R. Mutations in a putative global transcriptional regulator cause X-linked mental retardation with α-thalassemia (ATR-X syndrome). Cell 80, 837–845 (1995).
    Article CAS Google Scholar
  13. Sévenet, N. et al. Spectrum of hSNF5/INI1 somatic mutations in human cancer and genotype–phenotype correlations. Hum. Mol. Genet. 8, 2359–2368 (1999).
    Article Google Scholar
  14. Bochar, D.A. et al. BRCA1 is associated with a human SWI/SNF-related complex: linking chromatin remodeling to breast cancer. Cell 102, 257–265 (2000).
    Article CAS Google Scholar
  15. Schäffer, A.A., Gupta, S.K., Shriram, K. & Cottingham, R.W. Jr. Avoiding recomputation in linkage analysis. Hum. Hered. 44, 225–237 (1994).
    Article Google Scholar
  16. Gudbjartsson, D.F., Jonasson, K., Frigge, M.L. & Kong, A. Allegro, a new computer program for multipoint linkage analysis. Nature Genet. 25, 12–13 (2000).
    Article CAS Google Scholar
  17. den Dunnen, J.T. & Antonarakis, S.E. Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion. Hum. Mutat. 15, 7–12 (2000).
    Article CAS Google Scholar
  18. Shaffer, L.G., Kennedy, G.M., Spikes, A.S. & Lupski, J.R. Diagnosis of CMT1A duplications and HNPP deletions by interphase FISH: implications for testing in the cytogenetics laboratory. Am. J. Med. Genet. 69, 325–331 (1997).
    Article CAS Google Scholar
  19. Walker, J.E., Saraste, M., Runswick, M.J. & Gay, N.J. Distantly related sequences in the α- and β-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J. 1, 945–951 (1982).
    Article CAS Google Scholar
  20. Korolev, S., Hsieh, J., Gauss, G.H., Lohman, T.M. & Waksman, G. Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP. Cell 90, 635–647 (1997).
    Article CAS Google Scholar
  21. Subramanya, H.S., Bird, L.E., Brannigan, J.A. & Wigley, D.B. Crystal structure of a DExx box DNA helicase. Nature 384, 379–383 (1996).
    Article CAS Google Scholar
  22. Yao, N. et al. Structure of the hepatitis C virus RNA helicase domain. Nature Struct. Biol. 4, 463–467 (1997).
    Article CAS Google Scholar
  23. Kim, J.L. et al. Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding. Structure 6, 89–100 (1998).
    Article CAS Google Scholar
  24. Hall, M.C., Özsoy, A.Z. & Matson, S.W. Site-directed mutations in motif VI of Escherichia coli DNA helicase II result in multiple biochemical defects: evidence for the involvement of motif VI in the coupling of ATPase and DNA binding activities via conformational changes. J. Mol. Biol. 277, 257–271 (1998).
    Article CAS Google Scholar
  25. Hall, M.C. & Matson, S.W. Mutation of a highly conserved arginine in motif IV of Escherichia coli DNA helicase II results in an ATP-binding defect. J. Biol. Chem. 272, 18614–18620 (1997).
    Article CAS Google Scholar

Download references

Acknowledgements

We thank the families described for their cooperation and H. Bellen for critical review of this manuscript. H.T. is a recipient of a postdoctoral fellowship from the Charcot–Marie–Tooth Association. This study was supported in part by the Kleberg Foundation and by grants from the US National Institute of Diabetes, Digestive, and Kidney Diseases (to C.F.B.), from the US National Institute of Eye Diseases (to D.W.S.) and from the US National Institute of Neurological Disorders and Stroke (to J.R.L.).

Author information

Authors and Affiliations

  1. Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, 77030, Texas, USA
    Cornelius F. Boerkoel, Hiroshi Takashima, Joy John, Jiong Yan, Pawel Stankiewicz, Lisa Rosenbarker, James R. Lupski & David W. Stockton
  2. Department of Medicine, Baylor College of Medicine, Houston, 77030, Texas, USA
    David W. Stockton
  3. Department of Ophthalmology, Baylor College of Medicine, Houston, 77030, Texas, USA
    David W. Stockton
  4. Department of Pediatrics, Baylor College of Medicine, Houston, 77030, Texas, USA
    James R. Lupski
  5. Kleberg Genotyping Center, Baylor College of Medicine, Houston, 77030, Texas, USA
    Joy John & David W. Stockton
  6. Department of Néphrologie Pédiatrique, Hôpital d'Enfants, Centre Hospitalier Universitaire de Nancy, Vandoeuvre les Nancy, France
    Jean-Luc André
  7. Institute of Mother and Child Health Care of Serbia, Belgrade, Yugoslavia
    Radovan Bogdanovic
  8. Department of Unité de Néphrologie Pédiatrique, Centre Hospitalier Universitaire de Besançon, Besançon, France
    Antoine Burguet
  9. University of Alberta, Clinical Sciences Building, Edmonton, Alberta, Canada
    Sandra Cockfield
  10. Department of Unidade de Genetica, Hospital de Santa Maria, Servico de Pediatria, Lisbon, Portugal
    Isabel Cordeiro
  11. Department of KfH Kinderdialyse, Münster, Germany
    Stefan Fründ
  12. Department of Universitätsklinikum Essen, Kinderklinik, Essen, Germany
    Friederike Illies & Anja Stein
  13. Department of Phoenix Children's Hospital, Section of Pediatric Nephrology, Phoenix, Arizona, USA
    Mark Joseph
  14. Helsinki University Central Hospital, Clinical Genetics Unit, Helsinki, Finland
    Ilkka Kaitila
  15. Department of Pediatrics, University of Naples, Naples, Italy
    Giuliana Lama
  16. Department of Hopital Robert Debré, Service de Néphrologie, 48 Boulevard Sérurier, Paris, France
    Chantal Loirat
  17. Department of Alberta Children's Hospital, Calgary, Canada
    D. Ross McLeod
  18. Department of Nephrology, Birmingham Children's Hospital, Birmingham, UK
    David V. Milford
  19. Division of Medical Genetics, University of Michigan School of Medicine, Ann Arbor, Michigan, USA
    Elizabeth M. Petty
  20. Department of Hospital Universitario Virgen de La Arrixaca, Madrid, Spain
    Francisco Rodrigo
  21. Department of Hospital Pediátrico de Coimbra, Consulta de Genética, Coimbra, Portugal
    Jorge M. Saraiva
  22. Department of Universitätskinderklinik Köln, Cologne, Germany
    Beate Schmidt
  23. Department of KRUF Children's Kidney Centre, University Hospital of Wales, Cardiff, UK
    Graham C. Smith
  24. Department of Universitäts Kinderklinik, Mainz, Germany
    Jürgen Spranger
  25. Institut für Humangenetik und Medizinische Biologie, Martin-Luther-Universität Halle-Wittenberg, Halle, Germany
    Hannelore Thiele
  26. Department of Bristol Royal Hospital for Children, Renal Unit, Bristol, UK
    Jane Tizard
  27. Division of Clinical and Metabolic Genetics, Departments of Pediatrics and Medical Genetics and Microbiology, Hospital for Sick Children, University of Toronto, Toronto, Canada
    Rosanna Weksberg

Authors

  1. Cornelius F. Boerkoel
    You can also search for this author inPubMed Google Scholar
  2. Hiroshi Takashima
    You can also search for this author inPubMed Google Scholar
  3. Joy John
    You can also search for this author inPubMed Google Scholar
  4. Jiong Yan
    You can also search for this author inPubMed Google Scholar
  5. Pawel Stankiewicz
    You can also search for this author inPubMed Google Scholar
  6. Lisa Rosenbarker
    You can also search for this author inPubMed Google Scholar
  7. Jean-Luc André
    You can also search for this author inPubMed Google Scholar
  8. Radovan Bogdanovic
    You can also search for this author inPubMed Google Scholar
  9. Antoine Burguet
    You can also search for this author inPubMed Google Scholar
  10. Sandra Cockfield
    You can also search for this author inPubMed Google Scholar
  11. Isabel Cordeiro
    You can also search for this author inPubMed Google Scholar
  12. Stefan Fründ
    You can also search for this author inPubMed Google Scholar
  13. Friederike Illies
    You can also search for this author inPubMed Google Scholar
  14. Mark Joseph
    You can also search for this author inPubMed Google Scholar
  15. Ilkka Kaitila
    You can also search for this author inPubMed Google Scholar
  16. Giuliana Lama
    You can also search for this author inPubMed Google Scholar
  17. Chantal Loirat
    You can also search for this author inPubMed Google Scholar
  18. D. Ross McLeod
    You can also search for this author inPubMed Google Scholar
  19. David V. Milford
    You can also search for this author inPubMed Google Scholar
  20. Elizabeth M. Petty
    You can also search for this author inPubMed Google Scholar
  21. Francisco Rodrigo
    You can also search for this author inPubMed Google Scholar
  22. Jorge M. Saraiva
    You can also search for this author inPubMed Google Scholar
  23. Beate Schmidt
    You can also search for this author inPubMed Google Scholar
  24. Graham C. Smith
    You can also search for this author inPubMed Google Scholar
  25. Jürgen Spranger
    You can also search for this author inPubMed Google Scholar
  26. Anja Stein
    You can also search for this author inPubMed Google Scholar
  27. Hannelore Thiele
    You can also search for this author inPubMed Google Scholar
  28. Jane Tizard
    You can also search for this author inPubMed Google Scholar
  29. Rosanna Weksberg
    You can also search for this author inPubMed Google Scholar
  30. James R. Lupski
    You can also search for this author inPubMed Google Scholar
  31. David W. Stockton
    You can also search for this author inPubMed Google Scholar

Corresponding author

Correspondence toCornelius F. Boerkoel.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Rights and permissions

About this article

Cite this article

Boerkoel, C., Takashima, H., John, J. et al. Mutant chromatin remodeling protein SMARCAL1 causes Schimke immuno-osseous dysplasia.Nat Genet 30, 215–220 (2002). https://doi.org/10.1038/ng821

Download citation