Stupp, R. et al. Radiotherapy plus concomitant and adjuvant temozolomide for glioblastoma. N. Engl. J. Med.352, 987–996 (2005). ArticleCASPubMed Google Scholar
Verhaak, R.G. et al. Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell17, 98–110 (2010). ArticleCASPubMedPubMed Central Google Scholar
Balkwill, F.R. & Mantovani, A. Cancer-related inflammation: common themes and therapeutic opportunities. Semin. Cancer Biol.22, 33–40 (2012). ArticleCASPubMed Google Scholar
Joyce, J.A. & Pollard, J.W. Microenvironmental regulation of metastasis. Nat. Rev. Cancer9, 239–252 (2009). ArticleCASPubMed Google Scholar
Bingle, L., Brown, N.J. & Lewis, C.E. The role of tumour-associated macrophages in tumour progression: implications for new anticancer therapies. J. Pathol.196, 254–265 (2002). ArticleCASPubMed Google Scholar
Hussain, S.F. et al. The role of human glioma-infiltrating microglia/macrophages in mediating antitumor immune responses. Neuro-oncol.8, 261–279 (2006). ArticleCASPubMedPubMed Central Google Scholar
Komohara, Y., Ohnishi, K., Kuratsu, J. & Takeya, M. Possible involvement of the M2 anti-inflammatory macrophage phenotype in growth of human gliomas. J. Pathol.216, 15–24 (2008). ArticleCASPubMed Google Scholar
Wyckoff, J. et al. A paracrine loop between tumor cells and macrophages is required for tumor cell migration in mammary tumors. Cancer Res.64, 7022–7029 (2004). ArticleCASPubMed Google Scholar
Coniglio, S.J. et al. Microglial stimulation of glioblastoma invasion involves EGFR and CSF-1R signaling. Mol. Med.18, 519–527 (2012). ArticleCASPubMedPubMed Central Google Scholar
Ruffell, B., Affara, N.I. & Coussens, L.M. Differential macrophage programming in the tumor microenvironment. Trends Immunol.33, 119–126 (2012). ArticleCASPubMedPubMed Central Google Scholar
Manthey, C.L. et al. JNJ-28312141, a novel orally active colony-stimulating factor-1 receptor/FMS-related receptor tyrosine kinase-3 receptor tyrosine kinase inhibitor with potential utility in solid tumors, bone metastases, and acute myeloid leukemia. Mol. Cancer Ther.8, 3151–3161 (2009). ArticleCASPubMed Google Scholar
Patel, S. & Player, M.R. Colony-stimulating factor-1 receptor inhibitors for the treatment of cancer and inflammatory disease. Curr. Top. Med. Chem.9, 599–610 (2009). ArticleCASPubMed Google Scholar
Fomchenko, E.I. et al. Recruited cells can become transformed and overtake PDGF-induced murine gliomas in vivo during tumor progression. PLoS ONE6, e20605 (2011). ArticleCASPubMedPubMed Central Google Scholar
Hambardzumyan, D., Amankulor, N.M., Helmy, K.Y., Becher, O.J. & Holland, E.C. Modeling adult gliomas using RCAS/t-va technology. Transl. Oncol.2, 89–95 (2009). ArticlePubMedPubMed Central Google Scholar
Huse, J.T. & Holland, E.C. Genetically engineered mouse models of brain cancer and the promise of preclinical testing. Brain Pathol.19, 132–143 (2009). ArticleCASPubMed Google Scholar
Hambardzumyan, D., Parada, L.F., Holland, E.C. & Charest, A. Genetic modeling of gliomas in mice: new tools to tackle old problems. Glia59, 1155–1168 (2011). ArticlePubMedPubMed Central Google Scholar
Serrano, M. et al. Role of the INK4a locus in tumor suppression and cell mortality. Cell85, 27–37 (1996). ArticleCASPubMed Google Scholar
Wang, T. et al. Investigation of correlation among safety biomarkers in serum, histopathological examination, and toxicogenomics. Int. J. Toxicol.30, 300–312 (2011). ArticleCASPubMed Google Scholar
Kilic, T. et al. Intracranial inhibition of platelet-derived growth factor–mediated glioblastoma cell growth by an orally active kinase inhibitor of the 2-phenylaminopyrimidine class. Cancer Res.60, 5143–5150 (2000). CASPubMed Google Scholar
Takeuchi, H., Kanzawa, T., Kondo, Y. & Kondo, S. Inhibition of platelet-derived growth factor signalling induces autophagy in malignant glioma cells. Br. J. Cancer90, 1069–1075 (2004). ArticleCASPubMedPubMed Central Google Scholar
Shih, A.H. et al. Dose-dependent effects of platelet-derived growth factor-B on glial tumorigenesis. Cancer Res.64, 4783–4789 (2004). ArticleCASPubMed Google Scholar
Chitu, V. & Stanley, E.R. Colony-stimulating factor-1 in immunity and inflammation. Curr. Opin. Immunol.18, 39–48 (2006). ArticleCASPubMed Google Scholar
Luo, J. et al. Colony-stimulating factor 1 receptor (CSF1R) signaling in injured neurons facilitates protection and survival. J. Exp. Med.210, 157–172 (2013). ArticleCASPubMedPubMed Central Google Scholar
Erblich, B., Zhu, L., Etgen, A.M., Dobrenis, K. & Pollard, J.W. Absence of colony stimulation factor-1 receptor results in loss of microglia, disrupted brain development and olfactory deficits. PLoS ONE6, e26317 (2011). ArticleCASPubMedPubMed Central Google Scholar
Lin, H. et al. Discovery of a cytokine and its receptor by functional screening of the extracellular proteome. Science320, 807–811 (2008). ArticleCASPubMed Google Scholar
Bradley, E.W., Ruan, M.M. & Oursler, M.J. Novel pro-survival functions of the Kruppel-like transcription factor Egr2 in promotion of macrophage colony-stimulating factor–mediated osteoclast survival downstream of the MEK/ERK pathway. J. Biol. Chem.283, 8055–8064 (2008). ArticleCASPubMed Google Scholar
Friedman, J., Hastie, T. & Tibshirani, R. Regularization paths for generalized linear models via coordinate descent. J. Stat. Softw.33, 1–22 (2010). ArticlePubMedPubMed Central Google Scholar
Croucher, D.R., Saunders, D.N., Lobov, S. & Ranson, M. Revisiting the biological roles of PAI2 (SERPINB2) in cancer. Nat. Rev. Cancer8, 535–545 (2008). ArticleCASPubMed Google Scholar
Biswas, S.K. & Mantovani, A. Macrophage plasticity and interaction with lymphocyte subsets: cancer as a paradigm. Nat. Immunol.11, 889–896 (2010). ArticleCASPubMed Google Scholar
Töröcsik, D. et al. Factor XIII-A is involved in the regulation of gene expression in alternatively activated human macrophages. Thromb. Haemost.104, 709–717 (2010). ArticleCASPubMed Google Scholar
Probst-Cousin, S., Rickert, C.H. & Gullotta, F. Factor XIIIa-immunoreactivity in tumors of the central nervous system. Clin. Neuropathol.17, 79–84 (1998). CASPubMed Google Scholar
Chen, P. et al. Tumor-associated macrophages promote angiogenesis and melanoma growth via adrenomedullin in a paracrine and autocrine manner. Clin. Cancer Res.17, 7230–7239 (2011). ArticleCASPubMed Google Scholar
Schroder, W.A., Major, L. & Suhrbier, A. The role of SerpinB2 in immunity. Crit. Rev. Immunol.31, 15–30 (2011). ArticleCASPubMed Google Scholar
Solinas, G. et al. Tumor-conditioned macrophages secrete migration-stimulating factor: a new marker for M2-polarization, influencing tumor cell motility. J. Immunol.185, 642–652 (2010). ArticleCASPubMed Google Scholar
Sica, A., Schioppa, T., Mantovani, A. & Allavena, P. Tumour-associated macrophages are a distinct M2 polarised population promoting tumour progression: potential targets of anti-cancer therapy. Eur. J. Cancer42, 717–727 (2006). ArticleCASPubMed Google Scholar
Fleetwood, A.J., Lawrence, T., Hamilton, J.A. & Cook, A.D. Granulocyte-macrophage colony-stimulating factor (CSF) and macrophage CSF-dependent macrophage phenotypes display differences in cytokine profiles and transcription factor activities: implications for CSF blockade in inflammation. J. Immunol.178, 5245–5252 (2007). ArticleCASPubMed Google Scholar
Sierra-Filardi, E. et al. Activin A skews macrophage polarization by promoting a proinflammatory phenotype and inhibiting the acquisition of anti-inflammatory macrophage markers. Blood117, 5092–5101 (2011). ArticleCASPubMed Google Scholar
Squatrito, M. et al. Loss of ATM/Chk2/p53 pathway components accelerates tumor development and contributes to radiation resistance in gliomas. Cancer Cell18, 619–629 (2010). ArticleCASPubMed Google Scholar
Cancer Genome Atlas Research Network. Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature455, 1061–1068 (2008).
Freije, W.A. et al. Gene expression profiling of gliomas strongly predicts survival. Cancer Res.64, 6503–6510 (2004). ArticleCASPubMed Google Scholar
Phillips, H.S. et al. Molecular subclasses of high-grade glioma predict prognosis, delineate a pattern of disease progression, and resemble stages in neurogenesis. Cancer Cell9, 157–173 (2006). ArticleCASPubMed Google Scholar
Murat, A. et al. Stem cell–related “self-renewal” signature and high epidermal growth factor receptor expression associated with resistance to concomitant chemoradiotherapy in glioblastoma. J. Clin. Oncol.26, 3015–3024 (2008). ArticleCASPubMed Google Scholar
Noushmehr, H. et al. Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell17, 510–522 (2010). ArticleCASPubMedPubMed Central Google Scholar
DeNardo, D.G. et al. Leukocyte complexity predicts breast cancer survival and functionally regulates response to chemotherapy. Cancer Discovery1, 54–67 (2011). ArticleCASPubMedPubMed Central Google Scholar
Shree, T. et al. Macrophages and cathepsin proteases blunt chemotherapeutic response in breast cancer. Genes Dev.25, 2465–2479 (2011). ArticleCASPubMedPubMed Central Google Scholar
Kioi, M. et al. Inhibition of vasculogenesis, but not angiogenesis, prevents the recurrence of glioblastoma after irradiation in mice. J. Clin. Invest.120, 694–705 (2010). ArticleCASPubMedPubMed Central Google Scholar
Dai, C. et al. PDGF autocrine stimulation dedifferentiates cultured astrocytes and induces oligodendrogliomas and oligoastrocytomas from neural progenitors and astrocytes in vivo. Genes Dev.15, 1913–1925 (2001). ArticleCASPubMedPubMed Central Google Scholar
Tchougounova, E. et al. Loss of Arf causes tumor progression of PDGFB-induced oligodendroglioma. Oncogene26, 6289–6296 (2007). ArticleCASPubMed Google Scholar
Hohl, T.M. et al. Inflammatory monocytes facilitate adaptive CD4 T cell responses during respiratory fungal infection. Cell Host Microbe6, 470–481 (2009). ArticleCASPubMedPubMed Central Google Scholar
Cailhier, J.F. et al. Conditional macrophage ablation demonstrates that resident macrophages initiate acute peritoneal inflammation. J. Immunol.174, 2336–2342 (2005). ArticleCASPubMed Google Scholar
Duffield, J.S. et al. Selective depletion of macrophages reveals distinct, opposing roles during liver injury and repair. J. Clin. Invest.115, 56–65 (2005). ArticleCASPubMedPubMed Central Google Scholar
Ueno, M. et al. Layer V cortical neurons require microglial support for survival during postnatal development. Nat. Neurosci.16, 543–551 (2013). ArticleCASPubMed Google Scholar
Okabe, M., Ikawa, M., Kominami, K., Nakanishi, T. & Nishimune, Y. 'Green mice' as a source of ubiquitous green cells. FEBS Lett.407, 313–319 (1997). ArticleCASPubMed Google Scholar
Pontén, J. & Macintyre, E.H. Long term culture of normal and neoplastic human glia. Acta Pathol. Microbiol. Scand.74, 465–486 (1968). ArticlePubMed Google Scholar
Walker, W.S. Establishment of mononuclear phagocyte cell lines. J. Immunol. Methods174, 25–31 (1994). ArticleCASPubMed Google Scholar
Bocchini, V. et al. An immortalized cell line expresses properties of activated microglial cells. J. Neurosci. Res.31, 616–621 (1992). ArticleCASPubMed Google Scholar
Szerlip, N.J. et al. Intratumoral heterogeneity of receptor tyrosine kinases EGFR and PDGFRA amplification in glioblastoma defines subpopulations with distinct growth factor response. Proc. Natl. Acad. Sci. USA109, 3041–3046 (2012). ArticlePubMedPubMed Central Google Scholar
Ponomarev, V. et al. A novel triple-modality reporter gene for whole-body fluorescent, bioluminescent, and nuclear noninvasive imaging. Eur. J. Nucl. Med. Mol. Imaging31, 740–751 (2004). ArticleCASPubMed Google Scholar
Jensen, J.B. & Parmar, M. Strengths and limitations of the neurosphere culture system. Mol. Neurobiol.34, 153–161 (2006). ArticleCASPubMed Google Scholar
Florey, O., Kim, S.E., Sandoval, C.P., Haynes, C.M. & Overholtzer, M. Autophagy machinery mediates macroendocytic processing and entotic cell death by targeting single membranes. Nat. Cell Biol.13, 1335–1343 (2011). ArticleCASPubMedPubMed Central Google Scholar
Hirai, H. et al. MK-2206, an allosteric Akt inhibitor, enhances antitumor efficacy by standard chemotherapeutic agents or molecular targeted drugs in vitro and in vivo. Mol. Cancer Ther.9, 1956–1967 (2010). ArticleCASPubMed Google Scholar
Gautier, L., Cope, L., Bolstad, B.M. & Irizarry, R.A. affy—analysis of Affymetrix GeneChip data at the probe level. Bioinformatics20, 307–315 (2004). ArticleCASPubMed Google Scholar
Smyth, G.K. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol.3, Article3 (2004). ArticlePubMed Google Scholar
Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA102, 15545–15550 (2005). ArticleCASPubMedPubMed Central Google Scholar
Therneau, T. A package for survival analysis in S. (R package version 2.36–12, 2012).
Warnes, G.R. et al. gplots: various R programming tools for plotting data (R package version 2.10.1, 2011).
Wickham, H. ggplot2: Elegant Graphics for Data Analysis (Springer, New York, 2009).