Synthesis and patterning of tunable multiscale materials with engineered cells (original) (raw)

• Fratzl, P. & Weinkamer, R. Nature’s hierarchical materials. Prog. Mater. Sci. 52, 1263–1334 (2007).
  Article CAS Google Scholar
• Kollmannsberger, P., Bidan, C. M., Dunlop, J. W. C. & Fratzl, P. The physics of tissue patterning and extracellular matrix organisation: How cells join forces. Soft Matter 7, 9549–9560 (2011).
  Article CAS Google Scholar
• Stevens, M. M. & George, J. H. Exploring and engineering the cell surface interface. Science 310, 1135–1138 (2005).
  Article CAS Google Scholar
• O’Toole, G., Kaplan, H. B. & Kolter, R. Biofilm formation as microbial development. Annu. Rev. Microbiol. 54, 49–79 (2000).
  Article Google Scholar
• Epstein, A. K., Pokroy, B., Seminara, A. & Aizenberg, J. Bacterial biofilm shows persistent resistance to liquid wetting and gas penetration. Proc. Natl Acad. Sci. USA 108, 995–1000 (2011).
  Article Google Scholar
• Belcher, A. M. et al. Control of crystal phase switching and orientation by soluble mollusc-shell proteins. Nature 381, 56–58 (1996).
  Article CAS Google Scholar
• Su, X. W., Zhang, D. M. & Heuer, A. H. Tissue regeneration in the shell of the Giant Queen Conch, Strombus gigas. Chem. Mater. 16, 581–593 (2004).
  Article CAS Google Scholar
• Aizenberg, J. et al. Skeleton of Euplectella sp: structural hierarchy from the nanoscale to the macroscale. Science 309, 275–278 (2005).
  Article CAS Google Scholar
• Weiner, S. & Wagner, H. D. The material bone: Structure mechanical function relations. Annu. Rev. Mater. Sci. 28, 271–298 (1998).
  Article CAS Google Scholar
• Brenner, K. & Arnold, F. H. Self-organization, layered structure, and aggregation enhance persistence of a synthetic biofilm consortium. PloS ONE 6, e16791 (2011).
  Article CAS Google Scholar
• Brenner, K., Karig, D. K., Weiss, R. & Arnold, F. H. Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium. Proc. Natl Acad. Sci. USA 104, 17300–17304 (2007).
  Article Google Scholar
• Hong, S. H. et al. Synthetic quorum-sensing circuit to control consortial biofilm formation and dispersal in a microfluidic device. Nature Commun. 3, 613 (2012).
  Article CAS Google Scholar
• Ma, Q., Yang, Z., Pu, M., Peti, W. & Wood, T. K. Engineering a novel c-di-GMP-binding protein for biofilm dispersal. Environ. Microbiol. 13, 631–642 (2011).
  Article CAS Google Scholar
• Lee, J., Jayaraman, A. & Wood, T. K. Indole is an inter-species biofilm signal mediated by SdiA. BMC Microbiol. 7, 42 (2007).
  Article CAS Google Scholar
• Payne, S. et al. Temporal control of self-organized pattern formation without morphogen gradients in bacteria. Mol. Syst. Biol. 9, 697 (2013).
  Article CAS Google Scholar
• Payne, S. & You, L. Engineered cell–cell communication and its applications. Adv. Biochem. Eng./Biotechnol. http://dx.doi.org/10.1007/10_2013_249 (2013).
• Barnhart, M. M. & Chapman, M. R. Curli biogenesis and function. Annu. Rev. Microbiol. 60, 131–147 (2006).
  Article CAS Google Scholar
• Callura, J. M., Cantor, C. R. & Collins, J. J. Genetic switchboard for synthetic biology applications. Proc. Natl Acad. Sci. USA 109, 5850–5855 ( 2012).
  Article Google Scholar
• Prigent-Combaret, C. et al. Developmental pathway for biofilm formation in curli-producing Escherichia coli strains: Role of flagella, curli and colanic acid. Environ. Microbiol. 2, 450–464 (2000).
  Article CAS Google Scholar
• Vidal, O. et al. Isolation of an Escherichia coli K-12 mutant strain able to form biofilms on inert surfaces: Involvement of a new ompR allele that increases curli expression. J. Bacteriology 180, 2442–2449 (1998).
  CAS Google Scholar
• Hung, C. et al. Escherichia coli biofilms have an organized and complex extracellular matrix structure. mBio 4, e00645–e00613 (2013).
  Google Scholar
• Wang, X., Hammer, N. D. & Chapman, M. R. The molecular basis of functional bacterial amyloid polymerization and nucleation. J. Biol. Chem. 283, 21530–21539 (2008).
  Article CAS Google Scholar
• Basu, S., Gerchman, Y., Collins, C. H., Arnold, F. H. & Weiss, R. A synthetic multicellular system for programmed pattern formation. Nature 434, 1130–1134 (2005).
  Article CAS Google Scholar
• Bacchus, W et al. Synthetic two-way communication between mammalian cells. Nature Biotechnol. 30, 991–996 (2012).
  Article CAS Google Scholar
• Tabor, J. J. et al. A synthetic genetic edge detection program. Cell 137, 1272–1281 (2009).
  Article Google Scholar
• Liu, C. et al. Sequential establishment of stripe patterns in an expanding cell population. Science 334, 238–241 (2011).
  Article CAS Google Scholar
• Jang, B., Park, J. Y., Tung, C. H., Kim, I. H. & Choi, Y. Gold nanorod-photosensitizer complex for near-infrared fluorescence imaging and photodynamic/photothermal therapy in vivo. ACS Nano 5, 1086–1094 (2011).
  Article CAS Google Scholar
• Dreaden, E. C. et al. Small molecule-gold nanorod conjugates selectively target and induce macrophage cytotoxicity towards breast cancer cells. Small 8, 2819–2822 (2012).
  Article CAS Google Scholar
• Libutti, S. K. et al. Phase I and pharmacokinetic studies of CYT-6091, a novel PEGylated colloidal gold-rhTNF nanomedicine. Clinical Cancer Research: An Official J. Am. Assoc. Can. Res. 16, 6139–6149 (2010).
  Article CAS Google Scholar
• Zakeri, B. et al. Peptide tag forming a rapid covalent bond to a protein, through engineering a bacterial adhesin. Proc. Natl Acad. Sci. USA 109, E690–E697 (2012).
  Article Google Scholar
• Polman, A. & Atwater, H. A. Photonic design principles for ultrahigh-efficiency photovoltaics. Nature Mater. 11, 174–177 (2012).
  Article CAS Google Scholar
• Reineck, P. et al. A solid-state plasmonic solar cell via metal nanoparticle self-assembly. Adv. Mater. 24, 4750–4755 (2012).
  Article CAS Google Scholar
• Curto, A. G. et al. Unidirectional emission of a quantum dot coupled to a nanoantenna. Science 329, 930–933 (2010).
  Article CAS Google Scholar
• Yuan, Z. L. et al. Electrically driven single-photon source. Science 295, 102–105 (2002).
  Article CAS Google Scholar
• Mao, C. et al. Viral assembly of oriented quantum dot nanowires. Proc. Natl Acad. Sci. USA 100, 6946–6951 (2003).
  Article CAS Google Scholar
• Zhang, S. G. Fabrication of novel biomaterials through molecular self-assembly. Nature Biotechnol. 21, 1171–1178 (2003).
  Article CAS Google Scholar
• King, N. P. et al. Computational design of self-assembling protein nanomaterials with atomic level accuracy. Science 336, 1171–1174 (2012)10.1126/science.1219364.
  Article CAS Google Scholar
• Mart, R. J., Osborne, R. D., Stevens, M. M. & Ulijn, R. V. Peptide-based stimuli-responsive biomaterials. Soft Matter 2, 822–835 (2006).
  Article CAS Google Scholar
• Webber, M. J. et al. Supramolecular nanostructures that mimic VEGF as a strategy for ischemic tissue repair. Proc. Natl Acad. Sci. USA 108, 13438–13443 (2011).
  Article Google Scholar
• So, C. R., Tamerler, C. & Sarikaya, M. Adsorption, diffusion, and self-assembly of an engineered gold-binding peptide on Au(111) investigated by atomic force microscopy. Angew. Chem. Int. Ed. 48, 5174–5177 (2009).
  Article CAS Google Scholar
• Channon, K. J., Devlin, G. L. & MacPhee, C. E. Efficient energy transfer within self-assembling peptide fibers: A route to light-harvesting nanomaterials. J. Am. Chem. Soc. 131, 12520–12521 (2009).
  Article CAS Google Scholar
• Scheibel, T. et al. Conducting nanowires built by controlled self-assembly of amyloid fibers and selective metal deposition. Proc. Natl Acad. Sci. USA 100, 4527–4532 (2003).
  Article CAS Google Scholar
• Smith, J. F., Knowles, T. P., Dobson, C. M., Macphee, C. E. & Welland, M. E. Characterization of the nanoscale properties of individual amyloid fibrils. Proc. Natl Acad. Sci. USA 103, 15806–15811 (2006).
  Article CAS Google Scholar
• Felgner, P. L. et al. Lipofection: A highly efficient, lipid-mediated DNA-transfection procedure. Proc. Natl Acad. Sci. USA 84, 7413–7417 (1987).
  Article CAS Google Scholar
• Winfree, E., Liu,, F., Wenzler, L. A. & Seeman, N. C. Design and self-assembly of two-dimensional DNA crystals. Nature 394, 539–544 (1998).
  Article CAS Google Scholar
• Rothemund, P. W. Folding DNA to create nanoscale shapes and patterns. Nature 440, 297–302 (2006).
  Article CAS Google Scholar
• Tian, B. et al. Macroporous nanowire nanoelectronic scaffolds for synthetic tissues. Nature Mater. 11, 986–994 (2012).
  Article CAS Google Scholar
• Hwang, S. W. et al. A physically transient form of silicon electronics. Science 337, 1640–1644 (2012).
  Article CAS Google Scholar
• Amsden, J. J. et al. Rapid nanoimprinting of silk fibroin films for biophotonic applications. Adv. Mater. 22, 1746–1749 (2010).
  Article CAS Google Scholar
• Lutolf, M. P. & Hubbell, J. A. Synthetic biomaterials as instructive extracellular microenvironments for morphogenesis in tissue engineering. Nature Biotechnol. 23, 47–55 (2005).
  Article CAS Google Scholar
• Prewitz, M. C. et al. Tightly anchored tissue-mimetic matrices as instructive stem cell microenvironments. Nature Methods 10, 788–794 (2013).
  Article CAS Google Scholar
• Chiu, W. K. & Yu, K. M. Direct digital manufacturing of three-dimensional functionally graded material objects. Computer-Aided Design 40, 1080–1093 (2008).
  Article Google Scholar
• Xia, Y., Rogers, J. A., Paul, K. E. & Whitesides, G. M. Unconventional methods for fabricating and patterning nanostructures. Chem. Rev. 99, 1823–1848 (1999).
  Article CAS Google Scholar
• Kolodkin-Gal, I. et al. D-amino acids trigger biofilm disassembly. Science 328, 627–629 (2010).
  Article CAS Google Scholar
• Gubeli, R. J., Burger, K. & Weber, W. Synthetic biology for mammalian cell technology and materials sciences. Biotechnol. Adv. 31, 68–78 (2013).
  Article CAS Google Scholar