Estimation of nuclear DNA content in plants using flow cytometry (original) (raw)
References
Doležel, J., Greilhuber, J. & Suda, J. Flow cytometry with plants: an overview. in Flow Cytometry with Plant Cells (eds. Doležel, J., Greilhuber, J. & Suda, J.) 41–65 (Wiley-VCH, Weinheim, Germany, 2007). Chapter Google Scholar
Loureiro, J., Suda, J., Doležel, J. & Santos, C. FLOWER: a plant DNA flow cytometry database. in Flow Cytometry with Plant Cells (eds. Doležel, J., Greilhuber, J. & Suda, J.) 423–438 (Wiley-VCH, Weinheim, Germany, 2007). Chapter Google Scholar
Greilhuber, J., Doležel, J., Lysák, M.A. & Bennett, M.D. The origin, evolution and proposed stabilization of the terms 'genome size' and 'C-value' to describe nuclear DNA contents. Ann. Bot. (Lond.)95, 255–260 (2005). ArticleCAS Google Scholar
Greilhuber, J. et al. Smallest angiosperm genomes found in Lentibulariaceae, with chromosomes of bacterial size. Plant Biol. (Stuttg).8, 770–777 (2006). ArticleCASPubMed Google Scholar
Leitch, I.J., Soltis, D.E., Soltis, P.S. & Bennett, M.D. Evolution of DNA amounts across land plants (Embryophyta). Ann. Bot. (Lond.)95, 207–217 (2005). ArticleCAS Google Scholar
Gregory, T.R. Coincidence, co-evolution or causation? DNA content, cell size and the C-value enigma. Biol. Rev. Camb. Philos. Soc.76, 65–101 (2001). ArticleCASPubMed Google Scholar
Bennett, M.D. Nuclear DNA content and minimum generation time in herbaceous plants. Proc. R. Soc. Lond. B. Biol. Sci.181, 109–135 (1972). ArticleCASPubMed Google Scholar
Leitch, I.J. & Bennett, M.D. Genome size and its uses: the impact of flow cytometry. in Flow Cytometry with Plant Cells (eds. Doležel, J., Greilhuber, J. & Suda, J.) 153–176 (Wiley-VCH, Weinheim, Germany, 2007). Chapter Google Scholar
Kron, P., Suda, J. & Husband, B.C. Applications of flow cytometry to evolutionary and population biology. Annu. Rev. Ecol. Evol. Syst.38, 847–876 (2007). Article Google Scholar
Rabinowicz, P.D. & Bennetzen, J.L. The maize genome as a model for efficient sequence analysis of large plant genomes. Curr. Opin. Plant Biol.9, 149–156 (2006). ArticleCASPubMed Google Scholar
Suda, J., Kron, P., Husband, B.C. & Trávníč ek, P. Flow cytometry and ploidy: applications in plant systematics, ecology and evolutionary biology. in Flow Cytometry with Plant Cells (eds. Doležel, J., Greilhuber, J. & Suda, J.) 103–130 (Wiley-VCH, Weinheim, Germany, 2007). Chapter Google Scholar
Matzk, F. Reproduction mode screening. in Flow Cytometry with Plant Cells (eds. Doležel, J., Greilhuber, J. & Suda, J.) 131–152 (Wiley-VCH, Weinheim, Germany, 2007). Chapter Google Scholar
Barow, M. & Meister, A. Endopolyploidy in seed plants is differently correlated to systematics, organ, life strategy and genome size. Plant Cell Environ.26, 571–584 (2003). Article Google Scholar
Barow, M. & Jovtchev, G. Endopolyploidy in plants and its analysis by flow cytometry. in Flow Cytometry with Plant Cells (eds. Doležel, J., Greilhuber, J. & Suda, J.) 349–372 (Wiley-VCH, Weinheim, Germany, 2007). Chapter Google Scholar
Barow, M. & Meister, A. Lack of correlation between AT frequency and genome size in higher plants and the effect of nonrandomness of base sequences on dye binding. Cytometry47, 1–7 (2002). ArticleCASPubMed Google Scholar
Meister, A. & Barow, M. DNA base composition of plant genomes. in Flow Cytometry with Plant Cells (eds. Doležel, J., Greilhuber, J. & Suda, J.) 177–215 (Wiley-VCH, Weinheim, Germany, 2007). Chapter Google Scholar
Pfosser, M., Magyar, Z. & Bögre, L. Cell cycle analysis in plants. in Flow Cytometry with Plant Cells (eds. Doležel, J., Greilhuber, J. & Suda, J.) 323–347 (Wiley-VCH, Weinheim, Germany, 2007). Chapter Google Scholar
Sgorbati, S., Sparvoli, E., Levi, M., Chiatante, D. & Giordano, P. Bivariate cytofluorometric analysis of DNA and nuclear protein content. Protoplasma144, 180–184 (1988). ArticleCAS Google Scholar
Zhang, C.Q., Gong, F.C., Lambert, G.M. & Galbraith, D.W. Cell type-specific characterization of nuclear DNA contents within complex tissues and organs. Plant Methods1, 7 (2005). ArticleCASPubMedPubMed Central Google Scholar
Darzynkiewicz, Z., Bedner, E., Li, X., Gorzyca, W. & Melamed, M.R. Laser-scanning cytometry: a new instrumentation with many applications. Exp. Cell Res.249, 1–12 (1999). ArticleCASPubMed Google Scholar
Ulrich, I. & Ulrich, W. High-resolution flow cytometry of nuclear DNA in higher plants. Protoplasma165, 212–215 (1991). Article Google Scholar
Galbraith, D.W. et al. Rapid flow cytometric analysis of the cell cycle in intact plant tissues. Science220, 1049–1051 (1983). ArticleCASPubMed Google Scholar
Suda, J. & Trávníček, P. Reliable DNA ploidy determination in dehydrated tissues of vascular plants by DAPI flow cytometry—new prospects for plant research. Cytometry A69, 273–280 (2006). ArticlePubMed Google Scholar
Śliwińska, E., Zielińska, E. & Jedrzejczik, I. Are seeds suitable for flow cytometric estimation of plant genome size? Cytometry A64, 72–79 (2005). ArticlePubMed Google Scholar
Nsabimana, A. & van Staden, J. Ploidy investigation of bananas (Musa spp.) from the National Banana Germplasm Collection at Rubona-Rwanda by flow cytometry. S. Afr. J. Bot.72, 302–305 (2006). Article Google Scholar
Heller, F.O. DNS-Bestimmung an Keimwurzeln von Vicia faba L. mit Hilfe der Impulscytophotometrie. Ber. Deutsch. Bot. Ges.86, 437–441 (1973). CAS Google Scholar
Sgorbati, S., Levi, M., Sparvoli, E., Trezzi, F. & Lucchini, G. Cytometry and flow cytometry of 4′,6-diamidino-2-phenylindole (DAPI)-stained suspensions of nuclei released from fresh and fixed tissues of plants. Physiol. Plantarum68, 471–476 (1986). ArticleCAS Google Scholar
Levi, M., Sparvoli, E., Sgorbati, S. & Chiatante, D. Rapid immunofluorescent identification of cells in the S phase in pea root meristems: an alternative to autoradiography. Physiol. Plantarum71, 68–72 (1987). ArticleCAS Google Scholar
Jarret, R.L. et al. DNA contents in Paspalum spp. determined by flow-cytometry. Genet. Resour. Crop Evol.42, 237–242 (1995). Article Google Scholar
Esteban, J.M. et al. Effects of various fixatives and fixation conditions on DNA ploidy analysis—a need for strict internal DNA standards. Am. J. Clin. Pathol.95, 460–466 (1991). ArticleCASPubMed Google Scholar
Shapiro, H. Practical Flow Cytometry 4th edn. (Wiley-Liss, New York, 2003). Book Google Scholar
Doležel, J., Sgorbati, S. & Lucretti, S. Comparison of three DNA fluorochromes for flow-cytometric estimation of nuclear DNA content in plants. Physiol. Plantarum85, 625–631 (1992). Article Google Scholar
Doležel, J. et al. Plant genome size estimation by flow cytometry: inter-laboratory comparison. Ann. Bot. (Lond.)82 (Suppl A), 17–26 (1998). Article Google Scholar
Greilhuber, J., Temsch, E.M. & Loureiro, J.C.M. Nuclear DNA content measurement. in Flow Cytometry with Plant Cells (eds. Doležel, J., Greilhuber, J., Suda, J.) 67–101 (Wiley-VCH, Weinheim, Germany, 2007). Chapter Google Scholar
Roux, N., Toloza, A., Radecki, Z., Zapata-Arias, F.J. & Doležel, J. Rapid detection of aneuploidy in Musa using flow cytometry. Plant Cell Rep.21, 483–490 (2003). ArticleCASPubMed Google Scholar
Suda, J., Krahulcová, A., Trávníček, P. & Krahulec, F. Ploidy level versus DNA ploidy level: an appeal for consistent terminology. Taxon55, 447–450 (2006). Article Google Scholar
Loureiro, J., Rodriguez, E., Doležel, J. & Santos, C. Comparison of four nuclear isolation buffers for plant DNA flow cytometry. Ann. Bot. (Lond.)98, 679–689 (2006). ArticleCAS Google Scholar
Loureiro, J., Rodriguez, E., Doležel, J. & Santos, C. Flow cytometric and microscopic analysis of the effect of tannic acid on plant nuclei and estimation of DNA content. Ann. Bot. (Lond.)98, 515–527 (2006). ArticleCAS Google Scholar
Suda, J. & Trávníček, P. Estimation of relative nuclear DNA content in dehydrated plant tissues by flow cytometry. in Current Protocols in Cytometry (eds. Robinson, J.P. et al.) 7.30.1–7.30.14 (John Wiley & Sons, New York, 2006). Google Scholar
Śliwińska, E. Nuclear DNA content analysis of plant seeds by flow cytometry. in Current Protocols in Cytometry (ed. Robinson, J.P. et al.) 7.29.1–7.29.13 (John Wiley & Sons, New York, 2006). Google Scholar
Galbraith, D.W. Protoplast analysis using flow cytometry and sorting. in Flow Cytometry with Plant Cells (eds. Doležel, J., Greilhuber, J. & Suda, J.) 231–250 (Wiley-VCH, Weinheim, Germany, 2007). Chapter Google Scholar
Doležel, J. & Göhde, W. Sex determination in dioecious plants Melandrium album and M. rubrum using high-resolution flow cytometry. Cytometry19, 103–106 (1995). ArticlePubMed Google Scholar
Doležel, J. & Bartoš, J. Plant DNA flow cytometry and estimation of nuclear genome size. Ann. Bot. (Lond.)95, 99–110 (2005). Article Google Scholar
Johnston, J.S., Bennett, M.D., Rayburn, A.L., Galbraith, D.W. & Price, H.J. Reference standards for determination of DNA content of plant nuclei. Am. J. Bot.86, 609 (1999). ArticleCASPubMed Google Scholar
Doležel, J., Bartoš, J., Voglmayr, H. & Greilhuber, J. Nuclear DNA content and genome size of trout and human. Cytometry A51, 127–128 (2003). ArticlePubMed Google Scholar
Doležel, J., Doleželová, M. & Novák, F.J. Flow cytometric estimation of nuclear DNA amount in diploid bananas (Musa acuminata and M. balbisiana). Biol. Plantarum36, 351–357 (1994). Article Google Scholar
Lysák, M.A. & Doležel, J. Estimation of nuclear DNA content in Sesleria (Poaceae). Caryologia52, 123–132 (1998). Article Google Scholar
Price, H.J., Hodnett, G. & Johnston, J.S. Sunflower (Helianthus annuus) leaves contain compounds that reduce nuclear propidium iodide fluorescence. Ann. Bot. (Lond.)86, 929–934 (2000). ArticleCAS Google Scholar