Crystal structure of the hCASK PDZ domain reveals the structural basis of class II PDZ domain target recognition (original) (raw)
References
Cho, K., Hunt, C. and Kennedy, M.B. The Rat Brain Postsynaptic Density Fraction Contains a Homolog of the Drosophila Discs-Large Tumor Suppressor Protein. Neuron9, 929–942 (1992). ArticleCAS Google Scholar
Woods, D.F. and Bryant, P.J. Molecular Cloning of the Lethal(1)Discs Large-1 Oncogene of Drosophila. Dev. Biol.134, 222–235 (1989). ArticleCAS Google Scholar
Anderson, J.M., Stevenson, B.R., Jestaitis, L.A., Goodenough, D. and Mooseker, M.S. Characterization of ZO-1, a Protein Component of the Tight Junction from Mouse Liver and Madin-Darby Canine Kidney Cells. J. Cell Biol.106, 1141–1149 (1988). ArticleCAS Google Scholar
Kornau, H., Schenker, L., Kennedy, M.B. and Seeburg, P. Domain Interaction Between NMDA Receptor Subunits and the Postsynaptic Density Protein PSD-95. Science269, 1737–1740 (1995). ArticleCAS Google Scholar
Niethammer, M., Kim, E. and Sheng, M. Interaction Between the C Terminus of NMDA Receptor Subunits and Multiple Members of the PSD-95 Family of Membrane-Associated Guanylate Kinases. J. Neurosci.16, 2157–2163 (1996). ArticleCAS Google Scholar
Kim, E., Neithammer, M., Rothschild, A., Jan, Y. and Sheng, M. Clustering of Shaker-Type Potassium Channels by Interaction with a Family of Membrane-Associated GuanylateKinases. Nature378, 85–88 (1995). ArticleCAS Google Scholar
Harrison, S.C. Peptide-Surface Association: The Case of PDZ and PTB Domains. Cell86, 341–343 (1996). ArticleCAS Google Scholar
Kuriyan, J. and Cowburn, D. Modular Peptide Recognition Domains in Eukaryotic Signaling. Annu. Rev. Biophys. Biomolec. Struct.26, 259–288 (1997). ArticleCAS Google Scholar
Gomperts, S.N. Clustering Membrane Protein: Itís All Coming Together with the PSD-95/SAP90 Protein Family. Cell84, 659–662 (1996). ArticleCAS Google Scholar
Sheng, M. PDZs and Receptor/Channel Clustering: Rounding Up the Latest Suspects. Neuron17, 575–578 (1996). ArticleCAS Google Scholar
Pawson, T. and Scott, J.D. Signaling through scaffold anchoring, and adaptor proteins. Science278, 2075–2080 (1997). ArticleCAS Google Scholar
Willot, E., Balda, M., Fanning, A., Jameson, B., Van Itallie, C. and Anderson, J.M. The Tight Junction Protein ZO-1 is Homologous to the Drosophila Discs-Large Tumor Suppressor Protein of Septate Junctions. Proc. Natl. Acad. Sci. USA90, 7834–7838 (1993). Article Google Scholar
Jesaitis, L. and Goodenough, D.A. Molecular Characterization and Tissue Distribution of ZO-2, a Tight Junction Protein Homologous to ZO-1 and the Drosophila Discs-Large Tumor Suppressor Protein. J. Cell Biol.124, 949–961 (1994). ArticleCAS Google Scholar
Fanning, A.S., Lapierre, L.A., Brecher, A.R., Van Itallie, C.M. and Anderson, J.M. Protein Interaction in the Tight Junction: The Role of MAGUK Proteins in Regulating Tight Junction Organization and Function. Curr. Topics Memb.43, 211–235 (1996). ArticleCAS Google Scholar
Fanning, A.S. and Anderson, J.M. PDZ Domains and the Formation of Protein Networks, at the Plasma Membrane. Curr. Topics Microbiol. Immunol.228, 209–233 (1997). Google Scholar
Woods, D.F. and Bryant, P.J. The Discs-Large Tumor Suppressor Gene of Drosophila Encodes a Guanylate Kinase Homolog Localized at Septate Junctions. Cell66, 451–464 (1991). ArticleCAS Google Scholar
Woods, D.F., Hough, C., Peel, D., Callaini, G. and Bryant, P.J. Dlg Protein is Required for Junction Structure, Cell Polarity, and Proliferation Control in Drosophila Epithelia J. Cell. Biol.134, 1469–1482 (1996). ArticleCAS Google Scholar
Muller, B.M. et al. Molecular Characterization and Spatial Distribution of SAP97, a Novel Presynaptic Protein Homologous to SAP90 and the Drosophila Discs-Large Tumor Suppressor Protein. J. Neurosci.15, 2354–2366 (1995). ArticleCAS Google Scholar
Irie, M. et al. Binding of Neuroliginsto PSD-95. Science277, 1511–1515 (1997). ArticleCAS Google Scholar
Dong, H. et al. GRIP: A Synaptic PDZ Domain-Containing Protein that Interacts with AMPA Receptors. Nature386, 279–284 (1997). ArticleCAS Google Scholar
Songyang, Z. et al. Recognition of Unique Carboxyl-Terminal Motifs by Distinct PDZ Domains. Science275, 73–77 (1997). ArticleCAS Google Scholar
Hata, Y., Butz, S. and Sudhof, T.C. CASK: A Novel dlg/PSD95 Homolog with an N-Terminal Calmodulin-Dependent Protein Kinase Domain Identified by Interaction with Neurexins. J. Neurosci.16, 2488–2494 (1996). ArticleCAS Google Scholar
Ushkaryov, Y., Petrenko, A., Geppert, M. and Sudhof, T.C. Neurexins: Synaptic Cell Surface Proteins Related to the alpha-Latrotoxin Receptor and Laminin. Science257, 50–56 (1992). ArticleCAS Google Scholar
Hoskins, R., Hajnal, A., Harp, S. and Kim, S.K. The C. elegans Vulval Induction Gene Lin-2 Endoes a Member of the MAGUK Family of Cell Junction Proteins. Dev.122, 97–111 (1996). CAS Google Scholar
Simske, J.S., Kaech, S.M., Harp, S. and Kim, S.K. Let-23 Receptor Localization by the Cell Junction Protein Lin-7 during C. elegans Vulval Induction. Cell85, 195–204 (1996). ArticleCAS Google Scholar
Doyle, D.A. et al. Crystal Structures of a Complexed and Peptide-Free Membrane Protein-Binding Domain: Molecular Basis of Peptide Recognition by PDZ. Cell85, 1067–1076 (1996). ArticleCAS Google Scholar
Cabral, J. et al. Crystal Structure of a PDZ Domain from the Human Homologue of Discs-Large Protein. Nature382, 649–652 (1996). ArticleCAS Google Scholar
Shultz, J. . et al. Specific Interactions between the Syntrophin PDZ Domain and Voltage-Gated Sodium Channels. Nature Struct. Biol.5, 19–24 (1998). Article Google Scholar
Hendrickson, W.A. Determination of macromolecular structures from anomalous diffraction of synchrotron radiation, Science254, 51–58 (1991). ArticleCAS Google Scholar
Brunger, A.T. The Free R Value: A Novel Statistical Quantity for Assessing the Accuracy of Crystal Structures. Nature355, 472–474 (1992). ArticleCAS Google Scholar
Leahy, D.J., Erickson, H.P., Aukhil, I., Joshi, P. and Hendrickson, W.A. Crystallization of a fragment of human fibronectin: introduction of methionine by site–directed mutagenesis to allow phasing via selenomethionine, Proteins19, 48–54 (1994). ArticleCAS Google Scholar
Otwinowski, Z. In: Collection and Processing (Sawyer, L., Isaacs, N. & Bailey, S. eds) 56–62 (SERC Daresbury Laboratory, Warrington,UK; 1993) Google Scholar
Brünger, A.T. et al. Crystallography and NMR System: A New Software Suite for Macromolecular Structure Determination, Acta Crystallogr. D, in the press (1998).
Otwinowski, Z. In: Proc. CCP4 study weekend 25-26 January (W. Wolf, P.R. Evans, A.G.W. Leslie, eds.) 80–85 (SERC Daresbury laboratory; 1991). Google Scholar
Phillips, J.C. & Hodgson, K.O. The use of anomalous scattering effects to phase diffraction patterson from macromolecules. Acta Crystallogr. A36, 856–864 (1980). Article Google Scholar
Burling, F.T., Weis, W.I., Flaherty, K.M. and Brunger, A.T. Direct Observation of Protein Solvation and Discrete Disorder with Experimental Crystallographic Phases. Science271, 72–77 (1996). ArticleCAS Google Scholar
Wang, B.-C. Resolution of phase ambiguity in macromolecular crystallography. Meth. Enz..115, 90–112 (1985). ArticleCAS Google Scholar
Zhang, K.Y.J. and Main, P. Histogram matching as a new density modification technique for phase refinement and extension of protein molecules. Acta Crystallogr.A46, 41–46 (1990). ArticleCAS Google Scholar
Jones, T.A., Zou, J.Y., Cowan, S. and Kjeldgaard, M. Improved Methods for Building Protein Models in Electron Density Maps and the Location of Errors in These Models. Acta Crystallogr. A47, 110–119 (1991). Article Google Scholar
Pannu, N.S., Murshudov, G.N., Dodson, E.J. & Read, R. Incorporation of prior phase information strengthens maximum likelihood structural refinement. Acta Crystallogr. D, in the press (1998).
Weis, W.I., Brünger, A.T., Skehel, J.J., Wiley, D.C., Refinement of the Influenza Virus Haemagglutinin by SimulatedAnnealing, J. Mol. Biol.212, 737–761 (1990). ArticleCAS Google Scholar
Jiang, J.-S. and Brünger, A.T. Protein hydration observed by x-ray diffraction: solvation properties of penicillopepsion and neuraminidase crystal structures, J. Mol. Biol243, 100–115 (1994). ArticleCAS Google Scholar
Read, R.J. Improved Fourier coefficients for maps using phases form partial structures with errors, Acta Crystallogr. A42, 140–149 (1986). Article Google Scholar
Hodel, A., Kim, S.-H. and Brünger, A.T., Model Bias in Macromolecular Crystal Structures, Acta Crystallogr.A48, 851–859 (1992). ArticleCAS Google Scholar
Pannu, N.S. and Read, R.J. Improved Structure Refinement Through Maximum likelyhood. Acta CrystallographyA52, 659–668 (1996). ArticleCAS Google Scholar
Adams, P.D., Pannu, N.S., Read, R.J. and Brünger, A.T. Cross-validated Maximum Likelihood Enhances Crystallographic Simluated Annealing Refinement. Proc. Natn. Acad. Sci. USA94, 5018–5023 (1997). ArticleCAS Google Scholar
Kraulis, P. MOLSCRIPT: A Program to Produce Both Detailed and Schematic Plots of Protein Structures. J. Appl. Crystallogr.24, 946–950 (1991). Article Google Scholar
Nicholls, A., Sharp, K.A. and Honig, B. Protein Folding and Association: Insights from the Interfacial and Thermodynamic Properties of Hydrocarbons. Proteins1, 281–296 (1991). Article Google Scholar
Bricogne, G. Bayesian Statistical Viewpoint on Structure Determination: Basic Concepts and Examples. Meths Enz..276, 361–423 (1997). ArticleCAS Google Scholar
Laskowski, R.A., MacArthur, M.W., Moss, D.S. and Thornton, J.M. PROCHECK: AProgram to Check the Stereochemical Quality of Protein Structures. J. Appl. Crystallogr.26, 283–291 (1993). ArticleCAS Google Scholar