Molecular recognition of histone H3 by the WD40 protein WDR5 (original) (raw)

• Luger, K. Structure and dynamic behavior of nucleosomes. Curr. Opin. Genet. Dev. 13, 127–135 (2003).
  Article CAS Google Scholar
• Woodcock, C.L. Chromatin architecture. Curr. Opin. Struct. Biol. 16, 213–220 (2006).
  Article CAS Google Scholar
• Iizuka, M. & Smith, M.M. Functional consequences of histone modifications. Curr. Opin. Genet. Dev. 13, 154–160 (2003).
  Article CAS Google Scholar
• Fischle, W., Wang, Y. & Allis, C.D. Histone and chromatin cross-talk. Curr. Opin. Cell Biol. 15, 172–183 (2003).
  Article CAS Google Scholar
• Zeng, L. & Zhou, M.M. Bromodomain: an acetyl-lysine binding domain. FEBS Lett. 513, 124–128 (2002).
  Article CAS Google Scholar
• Brehm, A., Tufteland, K.R., Aasland, R. & Becker, P.B. The many colours of chromodomains. Bioessays 26, 133–140 (2004).
  Article CAS Google Scholar
• Sims, R.J., III et al. Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains. J. Biol. Chem. 280, 41789–41792 (2005).
  Article CAS Google Scholar
• Huang, Y., Fang, J., Bedford, M.T., Zhang, Y. & Xu, R.M. Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A. Science 312, 748–751 (2006).
  Article CAS Google Scholar
• Wysocka, J. et al. WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell 121, 859–872 (2005).
  Article CAS Google Scholar
• Gori, F., Divieti, P. & Demay, M.B. Cloning and characterization of a novel WD-40 repeat protein that dramatically accelerates osteoblastic differentiation. J. Biol. Chem. 276, 46515–46522 (2001).
  Article CAS Google Scholar
• Gori, F. & Demay, M.B. BIG-3, a novel WD-40 repeat protein, is expressed in the developing growth plate and accelerates chondrocyte differentiation in vitro. Endocrinology 145, 1050–1054 (2004).
  Article CAS Google Scholar
• Gori, F. & Demay, M.B. The effects of BIG-3 on osteoblast differentiation are not dependent upon endogenously produced BMPs. Exp. Cell Res. 304, 287–292 (2005).
  Article CAS Google Scholar
• Gori, F., Friedman, L. & Demay, M.B. Wdr5, a novel WD repeat protein, regulates osteoblast and chondrocyte differentiation in vivo. J. Musculoskelet. Neuronal Interact. 5, 338–339 (2005).
  CAS PubMed Google Scholar
• Milne, T.A. et al. MLL targets SET domain methyltransferase activity to Hox gene promoters. Mol. Cell 10, 1107–1117 (2002).
  Article CAS Google Scholar
• Nakamura, T. et al. ALL-1 is a histone methyltransferase that assembles a supercomplex of proteins involved in transcriptional regulation. Mol. Cell 10, 1119–1128 (2002).
  Article CAS Google Scholar
• Goo, Y.H. et al. Activating signal cointegrator 2 belongs to a novel steady-state complex that contains a subset of trithorax group proteins. Mol. Cell. Biol. 23, 140–149 (2003).
  Article CAS Google Scholar
• Wysocka, J., Myers, M.P., Laherty, C.D., Eisenman, R.N. & Herr, W. Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3–K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1. Genes Dev. 17, 896–911 (2003).
  Article CAS Google Scholar
• Hughes, C.M. et al. Menin associates with a trithorax family histone methyltransferase complex and with the hoxc8 locus. Mol. Cell 13, 587–597 (2004).
  Article CAS Google Scholar
• Yokoyama, A. et al. Leukemia proto-oncoprotein MLL forms a SET1-like histone methyltransferase complex with menin to regulate Hox gene expression. Mol. Cell. Biol. 24, 5639–5649 (2004).
  Article CAS Google Scholar
• Milne, T.A. et al. MLL targets SET domain methyltransferase activity to Hox gene promoters. Mol. Cell 10, 1107–1117 (2002).
  Article CAS Google Scholar
• Milne, T.A. et al. MLL associates specifically with a subset of transcriptionally active target genes. Proc. Natl. Acad. Sci. USA 102, 14765–14770 (2005).
  Article CAS Google Scholar
• Guenther, M.G. et al. Global and Hox-specific roles for the MLL1 methyltransferase. Proc. Natl. Acad. Sci. USA 102, 8603–8608 (2005).
  Article CAS Google Scholar
• Shannon, M.P., Kaufman, T.C., Shen, M.W. & Judd, B.H. Lethality patterns and morphology of selected lethal and semi-lethal mutations in the zeste-white region of Drosophila melanogaster. Genetics 72, 615–638 (1972).
  CAS PubMed PubMed Central Google Scholar
• Hollmann, M., Simmerl, E., Schafer, U. & Schafer, M.A. The essential Drosophila melanogaster gene wds (will die slowly) codes for a WD-repeat protein with seven repeats. Mol. Genet. Genomics 268, 425–433 (2002).
  Article CAS Google Scholar
• Nielsen, P.R. et al. Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9. Nature 416, 103–107 (2002).
  Article CAS Google Scholar
• Jacobs, S.A. & Khorasanizadeh, S. Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail. Science 295, 2080–2083 (2002).
  Article CAS Google Scholar
• Schurter, B.T. et al. Methylation of histone H3 by coactivator-associated arginine methyltransferase 1. Biochemistry 40, 5747–5756 (2001).
  Article CAS Google Scholar
• Wang, Y. et al. Human PAD4 regulates histone arginine methylation levels via demethylimination. Science 306, 279–283 (2004).
  Article CAS Google Scholar
• Cuthbert, G.L. et al. Histone deimination antagonizes arginine methylation. Cell 118, 545–553 (2004).
  Article CAS Google Scholar
• Dai, J., Sultan, S., Taylor, S.S. & Higgins, J.M. The kinase haspin is required for mitotic histone H3 Thr 3 phosphorylation and normal metaphase chromosome alignment. Genes Dev. 19, 472–488 (2005).
  Article CAS Google Scholar
• Fischle, W., Wang, Y. & Allis, C.D. Binary switches and modification cassettes in histone biology and beyond. Nature 425, 475–479 (2003).
  Article CAS Google Scholar
• Lambright, D.G. et al. The 2.0 Å crystal structure of a heterotrimeric G protein. Nature 379, 311–319 (1996).
  Article CAS Google Scholar
• Orlicky, S., Tang, X., Willems, A., Tyers, M. & Sicheri, F. Structural basis for phosphodependent substrate selection and orientation by the SCFCdc4 ubiquitin ligase. Cell 112, 243–256 (2003).
  Article CAS Google Scholar
• Wu, G. et al. Structure of a beta-TrCP1-Skp1-beta-catenin complex: destruction motif binding and lysine specificity of the SCF(beta-TrCP1) ubiquitin ligase. Mol. Cell 11, 1445–1456 (2003).
  Article CAS Google Scholar
• Verreault, A., Kaufman, P.D., Kobayashi, R. & Stillman, B. Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4. Cell 87, 95–104 (1996).
  Article CAS Google Scholar
• Parthun, M.R., Widom, J. & Gottschling, D.E. The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolism. Cell 87, 85–94 (1996).
  Article CAS Google Scholar
• Verreault, A., Kaufman, P.D., Kobayashi, R. & Stillman, B. Nucleosomal DNA regulates the core-histone-binding subunit of the human Hat1 acetyltransferase. Curr. Biol. 8, 96–108 (1998).
  Article CAS Google Scholar
• Zhang, Q., Vo, N. & Goodman, R.H. Histone binding protein RbAp48 interacts with a complex of CREB binding protein and phosphorylated CREB. Mol. Cell. Biol. 20, 4970–4978 (2000).
  Article CAS Google Scholar
• Martinez-Balbas, M.A., Tsukiyama, T., Gdula, D. & Wu, C. Drosophila NURF-55, a WD repeat protein involved in histone metabolism. Proc. Natl. Acad. Sci. USA 95, 132–137 (1998).
  Article CAS Google Scholar
• Zhang, Y., Iratni, R., Erdjument-Bromage, H., Tempst, P. & Reinberg, D. Histone deacetylases and SAP18, a novel polypeptide, are components of a human Sin3 complex. Cell 89, 357–364 (1997).
  Article CAS Google Scholar
• Xue, Y. et al. NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities. Mol. Cell 2, 851–861 (1998).
  Article CAS Google Scholar
• Zhang, Y., LeRoy, G., Seelig, H.P., Lane, W.S. & Reinberg, D. The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities. Cell 95, 279–289 (1998).
  Article CAS Google Scholar
• Zhang, Y. et al. Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation. Genes Dev. 13, 1924–1935 (1999).
  Article CAS Google Scholar
• Kuzmichev, A., Nishioka, K., Erdjument-Bromage, H., Tempst, P. & Reinberg, D. Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein. Genes Dev. 16, 2893–2905 (2002).
  Article CAS Google Scholar
• Cao, R. et al. Role of histone H3 lysine 27 methylation in Polycomb-group silencing. Science 298, 1039–1043 (2002).
  Article CAS Google Scholar
• Sewalt, R.G. et al. Characterization of interactions between the mammalian polycomb-group proteins Enx1/EZH2 and EED suggests the existence of different mammalian polycomb-group protein complexes. Mol. Cell. Biol. 18, 3586–3595 (1998).
  Article CAS Google Scholar
• Montgomery, N.D. et al. The murine polycomb group protein Eed is required for global histone H3 lysine-27 methylation. Curr. Biol. 15, 942–947 (2005).
  Article CAS Google Scholar
• Sheffield, P., Garrard, S. & Derewenda, Z. Overcoming expression and purification problems of RhoGDI using a family of “parallel” expression vectors. Protein Expr. Purif. 15, 34–39 (1999).
  Article CAS Google Scholar
• Messerschmidt, A. & Pflugrath, J.W. Crystal orientation and X-ray pattern prediction routines for area-detector diffractometer systems in macromolecular crystallography. J. Appl. Crystallogr. 20, 306–315 (1987).
  Article CAS Google Scholar
• Lambert, C., Leonard, N., De Bolle, X. & Depiereux, E. ESyPred3D: prediction of proteins 3D structures. Bioinformatics 18, 1250–1256 (2002).
  Article CAS Google Scholar
• McCoy, A.J., Grosse-Kunstleve, R.W., Storoni, L.C. & Read, R.J. Likelihood-enhanced fast translation functions. Acta Crystallogr. D Biol. Crystallogr. 61, 458–464 (2005).
  Article Google Scholar
• Jones, T.A., Zou, J.Y., Cowan, S.W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47, 110–119 (1991).
  Article Google Scholar
• Murshudov, G.N., Vagin, A.A. & Dodson, E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D Biol. Crystallogr. 53, 240–255 (1997).
  Article CAS Google Scholar
• Nicholls, A., Sharp, K.A. & Honig, B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11, 281–296 (1991).
  Article CAS Google Scholar
• Fenn, T.D., Ringe, D. & Petsko, G.A. POVScript+: a program for model and data visualization using persistence of vision ray-tracing. J. Appl. Crystallogr. 36, 944–947 (2003).
  Article CAS Google Scholar