Analysis of gene expression profiles in human systemic lupus erythematosus using oligonucleotide microarray (original) (raw)

• Hochberg MC . The epidemiology of systemic lupus erythematosus. In: Wallace DJ, Hahn BH (eds). Dubois’ Lupus Erythematosus. Williams and Wilkins: Baltimore, 1997, pp 49–65.
  Google Scholar
• Wakeland EK, Liu K, Graham RR, Behrens TW . Delineating the genetic basis of systemic lupus erythematosus. Immunity 2001; 15: 397–408.
  Article CAS PubMed Google Scholar
• Deapen DM, Escalante A, Weinrib L, Horwitz DA, Mack M . A revised estimate of twin concordance in systemic lupus erythematosus. Arthritis Rheum 1992; 35: 311–318.
  Article CAS PubMed Google Scholar
• Vyse TJ, Todd JA . Genetic analysis of autoimmune diseases. Cell 1996; 85: 311–318.
  Article CAS PubMed Google Scholar
• Arnett FC . The genetic basis of lupus erythematosus. In: Wallace DJ, Hahn BH (eds). Dubois’ Lupus Erythematosus. Williams and Wilkins: Baltimore, 1997, pp 77–117.
  Google Scholar
• Wu J, Edberg JC, Redecha PB et al. A novel polymorphism of Fcγ RIIIa(CD16) alters receptor function and predisposes to autoimmune disease. J Clin Invest 1997; 100: 1059–1070.
  Article CAS PubMed PubMed Central Google Scholar
• Tsao BP, Cantor RM, Kalunian KC et al. Evidence for linkage of a candidate chromosome 1 region to human systemic lupus erythematosus. J Clin Invest 1997; 99: 725–731.
  Article CAS PubMed PubMed Central Google Scholar
• Shai R, Quismorio FP, Li L et al. Genome-wide screen for systemic lupus erythematosus susceptibility genes in multiplex families. Hum Mol Genet 1999; 8: 639–644.
  Article CAS PubMed Google Scholar
• Gaffney PM, Kearns GM, Shark KB et al. A genome-wide search for susceptibility genes in human systemic lupus erythematosus sib-pair families. Proc Natl Acad Sci USA 1998; 95: 14875–14879.
  Article CAS PubMed PubMed Central Google Scholar
• Gaffney PM, Ortmann WA, Selby SA et al. Genome screening in human systemic lupus erythematosus: results from a second Minnesota cohort and combined analyses of sib-pair families. Am J Hum Genet 2000; 66: 547–556.
  Article CAS PubMed PubMed Central Google Scholar
• Brown PO, Hartwell L . Genomics and human disease-variations on variation. Nature Genet 1998; 18: 91–93.
  Article CAS PubMed Google Scholar
• Derisi JL, Lyer VR, Brown PO . Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 1997; 278: 680–686.
  Article CAS PubMed Google Scholar
• Schena M, Shalon D, Davis RW et al. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995; 270: 467–470.
  Article CAS PubMed Google Scholar
• Heller RA, Schena M, Chai A et al. Discovery and analysis of inflammatory disease-related genes using cDNA microarrays. Proc Natl Acad Sci USA 1997; 94: 2150–2155.
  Article CAS PubMed PubMed Central Google Scholar
• Lawrance IC, Fiocchi C, Chakravarti S . Ulcerative colitis and Crohn's diseases: distinctive gene expression profiles and novel susceptibility candidate genes. Hum Mol Genet 2001; 10: 445–456.
  Article CAS PubMed Google Scholar
• Staudt LM . Gene expression physiology and pathophysiology of the immune system. Trends Immunol 2001; 22: 35–40.
  Article CAS PubMed Google Scholar
• Rus V, Atamas SP, Shustova V et al. Expression of cytokin- and chemokine-related genes in peripheral blood mononuclear cells from lupus patients by cDNA array. Clin Immunol 2002; 102: 283–290.
  Article CAS PubMed Google Scholar
• Taniguchi M, Miura K, Iwao H, and Yamanaka S . Quantitative assessment of DNA microarray—comparison with Northern blot analyses. Genomics 2001; 71: 34–39.
  Article CAS PubMed Google Scholar
• Von Wussow P, Jakschies D, Hartung K, Deicher H . Presence of interferon and anti-interferon in patients with systemic lupus erythematosus. Rheumatol Int 1988; 8: 225–230.
  Article CAS PubMed Google Scholar
• Preble OT, Rothko K, Klippel JH, Friedman RM, Johnston MI . Interferon-induced 2’-5’adenylate synthetase in vivo and interferon production in vitro by lymphocytes from systemic lupus erythematosus patients with and without circulating interferon. J Exp Med 1983; 157: 2140–2146.
  Article CAS PubMed Google Scholar
• Hylton W, Cayley J, Dore C, Denman AM . 2’,5’-Oligoadenylate synthetase induction in lymphocytes of patients with connective tissue diseases. Ann Rheum Dis 1986; 45: 220–224.
  Article CAS PubMed PubMed Central Google Scholar
• Tsao BP, Cantor RM, Grossman JM et al. PARP alleles within the linked chromosomal region are associated with systemic lupus erythematosus. J Clin Invest 1999; 103: 1135–1140.
  Article CAS PubMed PubMed Central Google Scholar
• Raziuddin S, Al-Janadi MA, Alwabel AA . T-cell receptor α/β chain-CD3 protein complex defect in systemic lupus erythematosus: T-cell function. Am J Med 1992; 93: 461–466.
  Article CAS PubMed Google Scholar
• Ytterberg SR, Schnitzer TJ . Serum interferon levels in patients with systemic lupus erythematosus. Arthritis Rheum 1982; 25: 401–406.
  Article CAS PubMed Google Scholar
• Hauptmann R, Swetly P . A novel class of human type I interferons. Nucleic Acids Res 1985; 13: 4739–4749.
  Article CAS PubMed PubMed Central Google Scholar
• Adolf GR . Monoclonal antibodies and enzyme immunoassays specific for human interferon (IFN) ω 1: evidence that IFN- ω 1 is a component of human leukocyte IFN. Virology 1990; 175: 410–417.
  Article CAS PubMed Google Scholar
• Cederblad B, Blomberg S, Vallin H et al. Patients with systemic lupus erythematosus have reduced numbers of circulating natural interferon-alpha-producing cells. J Autoimmunol 1998; 11: 465–470.
  Article CAS Google Scholar
• Blomberg S, Eloranta ML, Cederblad B et al. Presence of cutaneous interferon-α producing cells in patients with systemic lupus erythematosus. Lupus 2001; 10: 484–490.
  Article CAS PubMed Google Scholar
• Ronnblom LE, Alm GV, Oberg KE . Possible induction of systemic lupus erythematosus by interferon-α treatment in patient with a malignant carcinoid tumour. J Intern Med 1990; 227: 207–210.
  Article CAS PubMed Google Scholar
• Ronnblom LE, Alm GV, Oberg KE . Autoimmunity after alpha-interferon therapy for malignant carcinoid tumour. Ann Intern Med 1991; 115: 178–183.
  Article CAS PubMed Google Scholar
• Neubauer RH, Goldstein L, Rabin H, Stebbing N . Stimulation of in vitro immunoglobulin production by interferon-α. J Immunol 1985; 134: 299–303.
  CAS PubMed Google Scholar
• Marrack P, Kappler J, Mitchell T . Type I interferon keep activated T cells alive. J Exp Med 1999; 189: 521–529.
  Article CAS PubMed PubMed Central Google Scholar
• Su L, David M . Inhibition of B cell receptor-mediated apoptosis by IFN. J Immunol 1999; 162: 6317–6321.
  CAS PubMed Google Scholar
• Blanco P, Palucka AK, Gill M, Pascual V, Banchereau J . Induction of dendritic cell differentiation by IFN-α in systemic lupus erythematosus. Science 2001; 294: 1540–1543.
  Article CAS PubMed Google Scholar
• Ronnblom L, Alm GV . An etiopathogenic role for the type I IFN system in SLE. Trends Immunol 2001; 22: 427–431.
  Article CAS PubMed Google Scholar
• Shan XC, Bourdeau A, Rhoton A et al. Characterization and mapping to human chromosome 8q24.3 of Ly-6-related gene 9804 encoding an apparent homologue of mouse TSA-1. J Immunol 1998; 160: 197–208.
  CAS PubMed Google Scholar
• Godfrey DI, Masciantonio M, Tucek CL et al. Thymic shared antigen-1, a novel thymocyte marker discriminating immature from mature thymocyte subsets. J Immunol 1992; 148: 2006–2011.
  CAS PubMed Google Scholar
• Liossis SC, Ding XZ, Dennis GJ, Tsokos GC . Altered pattern of TCR/CD3-mediated protein-tyrosyl phosphorylation in T cells from patients with systemic lupus erythematosus. J Clin Invest 1998; 101: 1448–1457.
  Article CAS PubMed PubMed Central Google Scholar
• Brundula V, Rivas LJ, Blasini AM et al. Diminished levels of T cell receptor ζ chains in peripheral blood T lymphocytes from patients with systemic lupus erythematosus. Arthritis Rheum 1999; 42: 1908–1916.
  Article CAS PubMed Google Scholar
• Noda S, Kosugi A, Saitoh SI, Narumiya S, Hamaoka T . Protection from anti-TCR/CD3-induced apoptosis in immature thymocytes by a signal through thymic shared antigen-1/stem cell antigen-2. J Exp Med 1996; 183: 2355–2360.
  Article CAS PubMed Google Scholar
• Saitoh SI, Kosugi A, Noda S et al. Modulation of TCR-mediated signaling pathway by thymic shared antigen-1(TSA-1)/stem cell antigen-2(Sca-2). J Immunol 1995; 155: 5574–5581.
  CAS PubMed Google Scholar
• Dumont FJ, Coker LZ . Interferon-α/β enhances the expression of Ly-6 antigens on T cells in vivo and in vitro. Eur J Immunol 1986; 16: 735–740.
  Article CAS PubMed Google Scholar
• Golub TR, Slonim DK, Tamayo P et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999; 286: 531–537.
  Article CAS PubMed Google Scholar
• Tan EM, Cohen AS, Fries JF et al. The 1982 revised criteria for the classification of systemic lupus erythematosus. Arthritis Rheumatosus 1982; 25: 1271–1277.
  Article CAS Google Scholar
• Bombardier C, Gladman DD, Urowitz MB, Caron D, Chang CH . Derivation of the SLEDAI: a disease activity index for lupus patients. The Committee on Prognosis Studies in SLE. Arthritis Rheum 1992; 35: 630–640.
  Article CAS PubMed Google Scholar
• Lockhart DJ, Winzeler EA . Genomics, gene expression and DNA arrays. Nature 2000; 405: 827–836.
  Article CAS PubMed Google Scholar