Pediatric acute lymphoblastic leukemia (ALL) gene expression signatures classify an independent cohort of adult ALL patients (original) (raw)
Jaffe ES, Harris NL, Stein H, Vardiman JW . World Health Organization Classification of Tumours. Pathology and Genetics of Tumours of Haematopoietic and Lymphoid Tissues. Lyon: IARC Press, 2001. Google Scholar
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999; 286: 531–537. ArticleCASPubMed Google Scholar
Armstrong SA, Staunton JE, Silverman LB, Pieters R, Den Boer ML, Minden MD et al. MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia. Nat Genet 2002; 30: 41–47. ArticleCASPubMed Google Scholar
Kern W, Kohlmann A, Wuchter C, Schnittger S, Schoch C, Mergenthaler S et al. Correlation of protein expression and gene expression in acute leukemia. Cytometry 2003; 55B: 29–36. ArticleCAS Google Scholar
Kohlmann A, Schoch C, Schnittger S, Dugas M, Hiddemann W, Kern W et al. Molecular characterization of acute leukemias by use of microarray technology. Genes Chromosomes Cancer 2003; 37: 396–405. ArticleCASPubMed Google Scholar
Schoch C, Kohlmann A, Schnittger S, Brors B, Dugas M, Mergenthaler S et al. Acute myeloid leukemias with reciprocal rearrangements can be distinguished by specific gene expression profiles. Proc Natl Acad Sci USA 2002; 99: 10008–10013. ArticleCASPubMedPubMed Central Google Scholar
Yeoh EJ, Ross ME, Shurtleff SA, Williams WK, Patel D, Mahfouz R et al. Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell 2002; 1: 133–143. ArticleCASPubMed Google Scholar
Ferrando AA, Neuberg DS, Staunton J, Loh ML, Huard C, Raimondi SC et al. Gene expression signatures define novel oncogenic pathways in T cell acute lymphoblastic leukemia. Cancer Cell 2002; 1: 75–87. ArticleCASPubMed Google Scholar
Dugas M, Schoch C, Schnittger S, Haferlach T, Danhauser-Riedl S, Hiddemann W et al. A comprehensive leukemia database: integration of cytogenetics, molecular genetics and microarray data with clinical information, cytomorphology and immunophenotyping. Leukemia 2001; 15: 1805–1810. ArticleCASPubMed Google Scholar
Liu G, Loraine AE, Shigeta R, Cline M, Cheng J, Valmeekam V et al. NetAffx: Affymetrix probesets and annotations. Nucleic Acids Res 2003; 31: 82–86. ArticleCASPubMedPubMed Central Google Scholar
Tusher VG, Tibshirani R, Chu G . Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001; 98: 5116–5121. ArticleCASPubMedPubMed Central Google Scholar
Eisen MB, Spellman PT, Brown PO, Botstein D . Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998; 95: 14863–14868. ArticleCASPubMedPubMed Central Google Scholar
Hilsenbeck SG, Friedrichs WE, Schiff R, O’Connell P, Hansen RK, Osborne CK et al. Statistical analysis of array expression data as applied to the problem of tamoxifen resistance. J Natl Cancer Inst 1999; 91: 453–459. ArticleCASPubMed Google Scholar
Hubbell E, Liu WM, Mei R . Robust estimators for expression analysis. Bioinformatics 2002; 18: 1585–1592. ArticleCASPubMed Google Scholar
Liu WM, Mei R, Di X, Ryder TB, Hubbell E, Dee S et al. Analysis of high density expression microarrays with signed-rank call algorithms. Bioinformatics 2002; 18: 1593–1599. ArticleCASPubMed Google Scholar
Brown MP, Grundy WN, Lin D, Cristianini N, Sugnet CW, Furey TS et al. Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc Natl Acad Sci USA 2000; 97: 262–267. ArticleCASPubMedPubMed Central Google Scholar
Furey TS, Cristianini N, Duffy N, Bednarski DW, Schummer M, Haussler D . Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics 2000; 16: 906–914. ArticleCASPubMed Google Scholar
Vapnik V . Statistical Learning Theory. New York: Wiley, 1998. Google Scholar
Bene MC, Castoldi G, Knapp W, Ludwig WD, Matutes E, Orfao A et al. Proposals for the immunological classification of acute leukemias. European Group for the Immunological Characterization of Leukemias (EGIL). Leukemia 1995; 9: 1783–1786. CASPubMed Google Scholar
Rozovskaia T, Ravid-Amir O, Tillib S, Getz G, Feinstein E, Agrawal H et al. Expression profiles of acute lymphoblastic and myeloblastic leukemias with ALL-1 rearrangements. Proc Natl Acad Sci USA 2003; 100: 7853–7858. ArticleCASPubMedPubMed Central Google Scholar
Kawagoe H, Humphries RK, Blair A, Sutherland HJ, Hogge DE . Expression of HOX genes, HOX cofactors, and MLL in phenotypically and functionally defined subpopulations of leukemic and normal human hematopoietic cells. Leukemia 1999; 13: 687–698. ArticleCASPubMed Google Scholar
Masternak K, Muhlethaler-Mottet A, Villard J, Zufferey M, Steimle V, Reith W . CIITA is a transcriptional coactivator that is recruited to MHC class II promoters by multiple synergistic interactions with an enhanceosome complex. Genes Dev 2000; 14: 1156–1166. CASPubMedPubMed Central Google Scholar
Villadangos JA, Ploegh HL . Proteolysis in MHC class II antigen presentation: who's in charge? Immunity 2000; 12: 233–239. ArticleCASPubMed Google Scholar
Schwarz G, Brandenburg J, Reich M, Burster T, Driessen C, Kalbacher H . Characterization of legumain. Biol Chem 2002; 383: 1813–1816. ArticleCASPubMed Google Scholar
Liu C, Sun C, Huang H, Janda K, Edgington T . Overexpression of legumain in tumors is significant for invasion/metastasis and a candidate enzymatic target for prodrug therapy. Cancer Res 2003; 63: 2957–2964. CASPubMed Google Scholar
Weiner HL, Huang H, Zagzag D, Boyce H, Lichtenbaum R, Ziff EB . Consistent and selective expression of the discoidin domain receptor-1 tyrosine kinase in human brain tumors. Neurosurgery 2000; 47: 1400–1409. ArticleCASPubMed Google Scholar
Dyer MJ . The role of CAMPATH-1 antibodies in the treatment of lymphoid malignancies. Semin Oncol 1999; 26: 52–57. CASPubMed Google Scholar