Comparative and integrative functional genomics of HCC (original) (raw)
References
- Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A et al. (2000). Nature 403: 503–511.
- Beer DG, Kardia SL, Huang CC, Giordano TJ, Levin AM, Misek DE et al. (2002). Nat Med 8: 816–824.
- Bittner M, Meltzer P, Chen Y, Jiang Y, Seftor E, Hendrix M et al. (2000). Nature 406: 536–540.
- Bruix J, Boix L, Sala M, Llovet JM . (2004). Cancer Cell 5: 215–219.
- Bullinger L, Dohner K, Bair E, Frohling S, Schlenk RF, Tibshirani R et al. (2004). N Engl J Med 350: 1605–1616.
- Calvet X, Bruix J, Gines P, Bru C, Sole M, Vilana R et al. (1990). Hepatology 12: 753–760.
- Calvisi DF, Factor VM, Ladu S, Conner EA, Thorgeirsson SS . (2004). Gastroenterology 126: 1374–1386.
- Calvisi DF, Factor VM, Loi R, Thorgeirsson SS . (2001). Cancer Res 61: 2085–2091.
- Chang HY, Nuyten DS, Sneddon JB, Hastie T, Tibshirani R, Sorlie T et al. (2005). Proc Natl Acad Sci USA 102: 3738–3743.
- Chang HY, Sneddon JB, Alizadeh AA, Sood R, West RB, Montgomery K et al. (2004). PLoS Biol 2: E7.
- Chen X, Cheung ST, So S, Fan ST, Barry C, Higgins J et al. (2002). Mol Biol Cell 13: 1929–1939.
- Cheung C, Akiyama TE, Ward JM, Nicol CJ, Feigenbaum L, Vinson C et al. (2004). Cancer Res 64: 3849–3854.
- Chevret S, Trinchet JC, Mathieu D, Rached AA, Beaugrand M, Chastang C . (1999). J Hepatol 31: 133–141.
- CLIP investigators (1998). Hepatology 28: 751–755.
- Cooper GM, Sidow A . (2003). Curr Opin Genet Dev 13: 604–610.
- Dave SS, Wright G, Tan B, Rosenwald A, Gascoyne RD, Chan WC et al. (2004). N Engl J Med 351: 2159–2169.
- Davila JA, Morgan RO, Shaib Y, McGlynn KA, El Serag HB . (2004). Gastroenterology 127: 1372–1380.
- Eddy SR . (2002). Cell 109: 137–140.
- El Serag HB, Mason AC . (1999). N Engl J Med 340: 745–750.
- El Serag HB . (2004). Gastroenterology 127: S27–S34.
- Ellwood-Yen K, Graeber TG, Wongvipat J, Iruela-Arispe ML, Zhang J, Matusik R et al. (2003). Cancer Cell 4: 223–238.
- Fan CY, Pan J, Usuda N, Yeldandi AV, Rao MS, Reddy JK . (1998). J Biol Chem 273: 15639–15645.
- Gonzalez FJ, Peters JM, Cattley RC . (1998). J Natl Cancer Inst 90: 1702–1709.
- Hanahan D, Weinberg RA . (2000). Cell 100: 57–70.
- Hardison RC, Oeltjen J, Miller W . (1997). Genome Res 7: 959–966.
- Hsu HC, Jeng YM, Mao TL, Chu JS, Lai PL, Peng SY . (2000). Am J Pathol 157: 763–770.
- Iizuka N, Oka M, Yamada-Okabe H, Nishida M, Maeda Y, Mori N et al. (2003). Lancet 361: 923–929.
- Kim BY, Lee JG, Park S, Ahn JY, Ju YJ, Chung JH et al. (2004). Biochim Biophys Acta 1739: 50–61.
- Kimura M . (1968). Nature 217: 624–626.
- King JL, Jukes TH . (1969). Science 164: 788–798.
- Lapointe J, Li C, Higgins JP, Van De RM, Bair E, Montgomery K et al. (2004). Proc Natl Acad Sci USA 101: 811–816.
- Laurent-Puig P, Legoix P, Bluteau O, Belghiti J, Franco D, Binot F et al. (2001). Gastroenterology 120: 1763–1773.
- le Coutre P, Mologni L, Cleris L, Marchesi E, Buchdunger E, Giardini R et al. (1999). J Natl Cancer Inst 91: 163–168.
- Lee JS, Thorgeirsson SS . (2002). Hepatology 35: 1134–1143.
- Lee JS, Thorgeirsson SS . (2004). Gastroenterology 127: S51–S55.
- Lee JS, Chu IS, Heo J, Calvisi DF, Sun Z, Roskams T et al. (2004a). Hepatology 40: 667–676.
- Lee JS, Chu IS, Mikaelyan A, Calvisi DF, Heo J, Reddy JK et al. (2004b). Nat Genet 36: 1306–1311.
- Lee JS, Grisham JW, Thorgeirsson SS . (2005). Carcinogenesis 26: 1013–1020.
- Lenhard B, Sandelin A, Mendoza L, Engstrom P, Jareborg N, Wasserman WW . (2003). J Biol 2: 13.
- Llovet JM, Burroughs A, Bruix J . (2003). Lancet 362: 1907–1917.
- Llovet JM, Bustamante J, Castells A, Vilana R, Ayuso MC, Sala M et al. (1999). Hepatology 29: 62–67.
- Lossos IS, Czerwinski DK, Alizadeh AA, Wechser MA, Tibshirani R, Botstein D et al. (2004). N Engl J Med 350: 1828–1837.
- Lynch TJ, Bell DW, Sordella R, Gurubhagavatula S, Okimoto RA, Brannigan BW et al. (2004). N Engl J Med 350: 2129–2139.
- Mao TL, Chu JS, Jeng YM, Lai PL, Hsu HC . (2001). J Pathol 193: 95–101.
- McNeil C . (1998). J Natl Cancer Inst 90: 882–883.
- Murphy WJ, Pevzner PA, O'Brien SJ . (2004). Trends Genet 20: 631–639.
- Nam SW, Park JY, Ramasamy A, Shevade S, Islam A, Long PM et al. (2005). Hepatology 42: 809–818.
- Neo SY, Leow CK, Vega VB, Long PM, Islam AF, Lai PB et al. (2004). Hepatology 39: 944–953.
- Okabe H, Satoh S, Kato T, Kitahara O, Yanagawa R, Yamaoka Y et al. (2001). Cancer Res 61: 2129–2137.
- Okuda K, Ohtsuki T, Obata H, Tomimatsu M, Okazaki N, Hasegawa H et al. (1985). Cancer 56: 918–928.
- Paez JG, Janne PA, Lee JC, Tracy S, Greulich H, Gabriel S et al. (2004). Science 304: 1497–1500.
- Parkin DM, Bray F, Ferlay J, Pisani P . (2005). CA Cancer J Clin 55: 74–108.
- Pugh RN, Murray-Lyon IM, Dawson JL, Pietroni MC, Williams R . (1973). Br J Surg 60: 646–649.
- Rao MS, Lalwani ND, Watanabe TK, Reddy JK . (1984). Cancer Res 44: 1072–1076.
- Reddy JK, Lalwai ND . (1983). Crit Rev Toxicol 12: 1–58.
- Roepman P, Wessels LF, Kettelarij N, Kemmeren P, Miles AJ, Lijnzaad P et al. (2005). Nat Genet 37: 182–186.
- Ross DT, Scherf U, Eisen MB, Perou CM, Rees C, Spellman P et al. (2000). Nat Genet 24: 227–235.
- Sargent LM, Zhou X, Keck CL, Sanderson ND, Zimonjic DB, Popescu NC et al. (1999). Am J Pathol 154: 1047–1055.
- Sweet-Cordero A, Mukherjee S, Subramanian A, You H, Roix JJ, Ladd-Acosta C et al. (2005). Nat Genet 37: 48–55.
- Tan CK, Law NM, Ng HS, Machin D . (2003). J Clin Oncol 21: 2294–2298.
- Thorgeirsson SS, Grisham JW . (2002). Nat Genet 31: 339–346.
- Ureta-Vidal A, Ettwiller L, Birney E . (2003). Nat Rev Genet 4: 251–262.
- Valk PJ, Verhaak RG, Beijen MA, Erpelinck CA, Doorn-Khosrovani SBW, Boer JM et al. (2004). N Engl J Med 350: 1617–1628.
- van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, Voskuil DW et al. (2002). N Engl J Med 347: 1999–2009.
- van't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, Mao M et al. (2002). Nature 415: 530–536.
- Wistuba II, Gazdar AF, Minna JD . (2001). Semin Oncol 28: 3–13.
- Wong CM, Fan ST, Ng IO . (2001). Cancer 92: 136–145.
- Yarden Y, Sliwkowski MX . (2001). Nat Rev Mol Cell Biol 2: 127–137.
- Ye QH, Qin LX, Forgues M, He P, Kim JW, Peng AC et al. (2003). Nat Med 9: 416–423.
Download references