Genome-wide analysis of DNA copy-number changes using cDNA microarrays (original) (raw)

• Kallioniemi, A. et al. Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 258, 818–821 (1992).
  Article CAS Google Scholar
• Solinas-Toldo, S. et al. Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances. Genes Chromosomes Cancer 20, 399–407 (1997).
  Article CAS Google Scholar
• Pinkel, D. et al. High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nature Genet. 20, 207–211 (1998).
  Article CAS Google Scholar
• Geschwind, D.H. et al. Klinefelter's syndrome as a model of anomalous cerebral laterality: testing gene dosage in the X chromosome pseudoautosomal region using a DNA microarray. Dev. Genet. 23, 215–229 (1998).
  Article CAS Google Scholar
• Schuler, G.D. et al. A gene map of the human genome. Science 274, 540–546 (1996).
  Article CAS Google Scholar
• Deloukas, P. et al. A physical map of 30,000 human genes. Science 282, 744–746 (1998).
  Article CAS Google Scholar
• Schena, M., Shalon, D., Davis, R.W. & Brown, P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467–470 (1995).
  Article CAS Google Scholar
• DeRisi, J. et al. Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nature Genet. 14, 457–460 (1996).
  Article CAS Google Scholar
• Iyer, V. et al. The transcriptional program in the response of human fibroblasts to serum. Science 283, 83–87 (1999).
  Article CAS Google Scholar
• Kallioniemi, O.P. et al. ERBB2 amplification in breast cancer analyzed by fluorescence in situ hybridization. Proc. Natl Acad. Sci. USA 89, 5321–5325 (1992).
  Article CAS Google Scholar
• Lucito, R. et al. Genetic analysis using genomic representations. Proc. Natl Acad. Sci. USA 95, 4487–4492 (1998).
  Article CAS Google Scholar
• Gyapay, G. et al. A radiation hybrid map of the human genome. Hum. Mol. Genet. 5, 339–346 (1996).
  Article CAS Google Scholar
• Kallioniemi A. et al. Detection and mapping of amplified DNA sequences in breast cancer by comparative genomic hybridization. Proc. Natl Acad. Sci. USA 91, 2156–2160 (1994).
  Article CAS Google Scholar
• Gelmini, S. et al. Quantitative polymerase chain reaction-based homogeneous assay with fluorogenic probes to measure c-erbB-2 oncogene amplification. Clin. Chem. 43, 752–758 (1997).
  CAS Google Scholar
• Barlund, M. et al. Increased copy number at 17q22–q24 by CGH in breast cancer is due to high-level amplification of two separate regions. Genes Chromosomes Cancer 20, 372–376 (1997).
  Article CAS Google Scholar
• Kallioniemi, O.P. et al. Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors. Genes Chromosomes Cancer 10, 231–243 (1994).
  Article CAS Google Scholar
• Stein, D. et al. The SH2 domain protein GRB-7 is co-amplified, overexpressed and in a tight complex with HER2 in breast cancer. EMBO J. 13, 1331–1340 (1994).
  Article CAS Google Scholar
• Tomasetto C. et al. Identification of four novel human genes amplified and overexpressed in breast carcinoma and localized to the q11–q21.3 region of chromosome 17. Genomics 28, 367–376 (1995).
  Article CAS Google Scholar
• Guan, X.Y. et al. Hybrid selection of transcribed sequences from microdissected DNA: isolation of genes within amplified region at 20q11–q13.2 in breast cancer. Cancer Res. 56, 3446–3450 (1996).
  CAS PubMed Google Scholar
• Anzick, S.L. et al. AIB1, a steroid receptor coactivator amplified in breast and ovarian cancer. Science 277, 965–968 (1997).
  Article CAS Google Scholar
• Williamson, J.A. et al. Chromosomal mapping of the human and mouse homologues of two new members of the AP-2 family of transcription factors. Genomics 35, 262–264 (1996).
  Article CAS Google Scholar
• Sen, S., Zhou, H. & White, R.A. A putative serine/threonine kinase encoding gene BTAK on chromosome 20q13 is amplified and overexpressed in human breast cancer cell lines. Oncogene 14, 2195–2200 (1997).
  Article CAS Google Scholar
• Shalon, D., Smith, S.J. & Brown, P.O. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res. 6, 639–645 (1996).
  Article CAS Google Scholar
• DeRisi, J.L., Iyer, V.R. & Brown, P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278, 680–686 (1997).
  Article CAS Google Scholar
• Lennon, G., Auffray, C., Polymeropoulos, M. & Soares, M.B. The I.M.A.G.E. Consortium: an integrated molecular analysis of genomes and their expression. Genomics 33, 151–152 (1996).
  Article CAS Google Scholar
• Boguski, M.S. & Schuler, G.D. ESTablishing a human transcript map. Nature Genet. 10, 369–371 (1995).
  Article CAS Google Scholar
• Schuler, G.D. Pieces of the puzzle: expressed sequence tags and the catalog of human genes. J. Mol. Med. 75, 694–698 (1997).
  Article CAS Google Scholar
• Alitalo, K., Schwab, M., Lin, C.C., Varmus, H.E. & Bishop, J.M. Homogeneously staining chromosomal regions contain amplified copies of an abundantly expressed cellular oncogene (c-myc) in malignant neuroendocrine cells from a human colon carcinoma. Proc. Natl Acad. Sci. USA 80, 1707–1711 (1983).
  Article CAS Google Scholar
• Takahashi, T. et al. p53: a frequent target for genetic abnormalities in lung cancer. Science 246, 491–494 (1989).
  Article CAS Google Scholar
• Saxena, R. et al. The DAZ gene cluster on the human Y chromosome arose from an autosomal gene that was transposed, repeatedly amplified and pruned. Nature Genet. 14, 292–299 (1996).
  Article CAS Google Scholar