Mitochondrial genome variation and the origin of modern humans (original) (raw)

References

1. Olivio, P. D., Van de Walle, M. J., Laipis, P. J. & Hauswirth, W. W. Nucleotide sequence evidence for rapid genotypic shifts in the bovine mitochondrial DNA D-loop. Nature 306, 400– 402 (1983).
   Article ADS Google Scholar
2. Brown, W. M., George, M. Jr & Wilson, A. C. Rapid evolution of animal mitochondrial DNA. Proc. Natl Acad. Sci. USA 76, 1967– 1971 (1979).
   Article ADS CAS PubMed PubMed Central Google Scholar
3. Giles, R. E., Blanc, H., Cann, H. M. & Wallace, D. C. Maternal inheritance of human mitochondrial DNA. Proc. Natl Acad. Sci. USA 77, 6715–6719 (1980).
   Article ADS CAS PubMed PubMed Central Google Scholar
4. Tamura, K. & Nei, M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10, 512– 526 (1993).
   CAS PubMed Google Scholar
5. Maddison, D. R., Ruvolo, M. & Swofford, D. L. Geographic origins of human mitochondrial DNA: phylogenetic evidence from control region sequences. Syst. Biol. 41, 111–124 (1992).
   Article Google Scholar
6. Torroni, A. et al. mtDNA analysis reveals a major late Paleolithic population expansion from southwestern to northeastern Europe. Am. J. Hum. Genet. 62, 1137–1152 ( 1998).
   Article CAS PubMed PubMed Central Google Scholar
7. Kaessmann, H., Heissig, F., von Haeseler, A. & Paabo, S. DNA sequence variation in a non-coding region of low recombination on the human X chromosome. Nature Genet. 22, 78 –81 (1999).
   Article CAS PubMed Google Scholar
8. Strimmer, K. & von Haesseler, A. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13, 964–969 (1996).
   Article CAS Google Scholar
9. Sarich, V. M. & Wilson, A. C. Generation time and genomic evolution in primates. Science 179, 1144– 1147 (1973).
   Article ADS CAS PubMed Google Scholar
10. Andrews, P. Evolution and environment in the Hominoidea. Nature 360, 641–646 (1992).
    Article ADS CAS PubMed Google Scholar
11. Kumar, S. & Hedges, S. B. A molecular timescale for vertebrate evolution. Nature 392, 917– 920 (1998).
    Article ADS CAS PubMed Google Scholar
12. Awadalla, P., Eyre-Walker, A. & Smith, J. M. Linkage disequilibrium and recombination in hominid mitochondrial DNA. Science 286, 2524– 2525 (1999).
    Article CAS PubMed Google Scholar
13. Eyre-Walker, A., Smith, N. H. & Smith, J. M. How clonal are human mitochondria? Proc. R. Soc. Lond. B 266, 477–483 (1999).
    Article CAS Google Scholar
14. Kumar, S., Hedrick, P. & Stoneking, M. Questioning evidence for recombination in human mitochondrial DNA. Science 288, 1931 ( 2000).
    Article CAS PubMed Google Scholar
15. Lewontin, R. C. The interaction of selection and linkage. I. General considerations; heterotic models. Genetics 49, 49– 67 (1964).
    CAS PubMed PubMed Central Google Scholar
16. Vigilant, L., Stoneking, M., Harpending, H., Hawkes, K. & Wilson, A. C. African populations and the evolution of human mitochondrial DNA. Science 253, 1503–1507 (1991).
    Article ADS CAS PubMed Google Scholar
17. Cann, R. L., Stoneking, M. & Wilson, A. C. Mitochondrial DNA and human evolution. Nature 325, 31–36 ( 1987).
    Article ADS CAS PubMed Google Scholar
18. Wolpoff, M. H. in The Human Revolution: Behavioural and Biological Perspectives on the Origins of Modern Humans (eds Mellars, P. & Stringer, C.) 62–108 (Princeton Univ. Press, Princeton, New Jersey, 1989).
    Google Scholar
19. Horai, S., Hayasaka, K., Kondo, R., Tsugane, K. & Takahata, N. Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Proc. Natl Acad. Sci. USA 92, 532–536 ( 1995).
    Article ADS CAS PubMed PubMed Central Google Scholar
20. Ruvolo, M. et al. Mitochondrial COII sequences and modern human origins. Mol. Biol. Evol. 10, 1115–1135 (1993).
    CAS PubMed Google Scholar
21. Templeton, A. R. Human origins and analysis of mitochondrial DNA sequences. Science 255, 737 (1992).
    Article ADS CAS PubMed Google Scholar
22. Nei, M. Age of the common ancestor of human mitochondrial DNA. Mol. Biol. Evol. 9, 1176–1178 ( 1992).
    CAS PubMed Google Scholar
23. Saitou, N. & Nei, M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425 (1987).
    CAS PubMed Google Scholar
24. Zietkiewicz, E. et al. Genetic structure of the ancestral population of modern humans. J. Mol. Evol. 47, 146– 155 (1998).
    Article ADS CAS PubMed Google Scholar
25. Rogers, A. R. & Harpending, H. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9, 552–569 ( 1992).
    CAS PubMed Google Scholar
26. Fu, Y. X. & Li, W. H. Statistical tests of neutrality of mutations. Genetics 133, 693– 709 (1993).
    CAS PubMed PubMed Central Google Scholar
27. Tajima, F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585–595 (1989).
    CAS PubMed PubMed Central Google Scholar
28. Rozas, J. & Rozas, R. DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data. Comput. Appl. Biosci. 11, 621–625 (1995).
    CAS PubMed Google Scholar
29. Klein, R. G. The Human Career: Human Biological and Cultural Origins (Univ. Chicago Press, Chicago, 1989).
    Google Scholar
30. Reider, M. J., Taylor, S. L., Tobe, V. O. & Nickerson, D. A. Automating the identification of DNA variations using quality-based fluorescence re-sequencing: analysis of the human mitochondrial genome. Nucleic Acids Res. 26, 967–973 ( 1998).
    Article Google Scholar

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