ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis (original) (raw)

• Bird, A. DNA methylation patterns and epigenetic memory. Genes Dev. 16, 6–21 (2002)
  Article CAS Google Scholar
• Martienssen, R. A. & Colot, V. DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science 293, 1070–1074 (2001)
  Article CAS Google Scholar
• Tariq, M. & Paszkowski, J. DNA and histone methylation in plants. Trends Genet. 20, 244–251 (2004)
  Article CAS Google Scholar
• Bender, J. DNA methylation and epigenetics. Annu. Rev. Plant Biol. 55, 41–68 (2004)
  Article CAS Google Scholar
• Matzke, M. A. & Birchler, J. A. RNAi-mediated pathways in the nucleus. Nature Rev. Genet. 6, 24–35 (2005)
  Article CAS Google Scholar
• Chan, S. W., Henderson, I. R. & Jacobsen, S. E. Gardening the genome: DNA methylation in Arabidopsis thaliana . Nature Rev. Genet. 6, 351–360 (2005)
  Article CAS Google Scholar
• Zhu, J., Kapoor, A., Sridhar, V. V., Agius, F. & Zhu, J. K. The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis . Curr. Biol. 17, 54–59 (2007)
  Article CAS Google Scholar
• Penterman, J. et al. DNA demethylation in the Arabidopsis genome. Proc. Natl Acad. Sci. USA 104, 6752–6757 (2007)
  Article ADS CAS Google Scholar
• Lister, R. et al. Highly integrated single base resolution maps of the epigenome in Arabidopsis . Cell 133, 523–536 (2008)
  Article CAS Google Scholar
• Gong, Z. et al. ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase. Cell 111, 803–814 (2002)
  Article CAS Google Scholar
• Agius, F., Kapoor, A. & Zhu, J. K. Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation. Proc. Natl Acad. Sci. USA 103, 11796–11801 (2006)
  Article ADS CAS Google Scholar
• Morales-Ruiz, T. et al. DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases. Proc. Natl Acad. Sci. USA 103, 6853–6858 (2006)
  Article ADS CAS Google Scholar
• Gehring, M. et al. DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation. Cell 124, 495–506 (2006)
  Article CAS Google Scholar
• Kapoor, A., Agius, F. & Zhu, J. K. Preventing transcriptional gene silencing by active DNA demethylation. FEBS Lett. 579, 5889–5898 (2005)
  Article CAS Google Scholar
• Xiong, L. et al. FIERY1 encoding an inositol polyphosphate 1-phosphatase is a negative regulator of abscisic acid and stress signaling in Arabidopsis . Genes Dev. 15, 1971–1984 (2001)
  Article CAS Google Scholar
• Huettel, B. et al. Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis . EMBO J. 25, 2828–2836 (2006)
  Article CAS Google Scholar
• Zheng, X., Zhu, J., Kapoor, A. & Zhu, J. K. Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J. 26, 1691–1701 (2007)
  Article CAS Google Scholar
• Wassenegger, M. RNA-directed DNA methylation. Plant Mol. Biol. 43, 203–220 (2000)
  Article CAS Google Scholar
• Vaucheret, H. & Fagard, M. Transcriptional gene silencing in plants: targets, inducers and regulators. Trends Genet. 17, 29–35 (2001)
  Article CAS Google Scholar
• Baulcombe, D. RNA silencing in plants. Nature 431, 356–363 (2004)
  Article ADS CAS Google Scholar
• Brodersen, P. & Voinnet, O. The diversity of RNA silencing pathways in plants. Trends Genet. 22, 268–280 (2006)
  Article CAS Google Scholar
• Aravin, A. A. & Bourc’his, D. Small RNA guides for de novo DNA methylation in mammalian germ cells. Genes Dev. 22, 970–975 (2008)
  Article CAS Google Scholar
• Kim, D. H., Villeneuve, L. M., Morris, K. V. & Rossi, J. J. Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells. Nature Struct. Mol. Biol. 13, 793–797 (2006)
  Article CAS Google Scholar
• Janowski, B. A. et al. Involvement of AGO1 and AGO2 in mammalian transcriptional silencing. Nature Struct. Mol. Biol. 13, 787–792 (2006)
  Article CAS Google Scholar
• Li, L. C. et al. Small dsRNAs induce transcriptional activation in human cells. Proc. Natl Acad. Sci. USA 103, 17337–17342 (2006)
  Article ADS CAS Google Scholar
• Janowski, B. A. et al. Activating gene expression in mammalian cells with promoter-targeted duplex RNAs. Nature Chem. Biol. 3, 166–173 (2007)
  Article CAS Google Scholar
• Carrington, J. C. & Ambros, V. Role of microRNAs in plant and animal development. Science 301, 336–338 (2003)
  Article ADS CAS Google Scholar
• Ishitani, M., Xiong, L., Stevenson, B. & Zhu, J. K. Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways. Plant Cell 9, 1935–1949 (1997)
  Article CAS Google Scholar
• Dorweiler, J. E. et al. mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci. Plant Cell 12, 2101–2118 (2000)
  Article CAS Google Scholar
• Frommer, M. et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl Acad. Sci. USA 89, 1827–1831 (1992)
  Article ADS CAS Google Scholar
• Lu, R. et al. Animal virus replication and RNAi-mediated antiviral silencing in Caenorhabditis elegans . Nature 436, 1040–1043 (2005)
  Article ADS CAS Google Scholar
• Jasencakova, Z., Meister, A., Walter, J., Turner, B. M. & Schubert, I. Histone H4 acetylation of euchromatin and heterochromatin is cell cycle dependent and correlated with replication rather than with transcription. Plant Cell 12, 2087–2100 (2000)
  Article CAS Google Scholar
• Pontes, O. et al. The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center. Cell 126, 79–92 (2006)
  Article CAS Google Scholar
• Sunkar, R. & Zhu, J. K. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis . Plant Cell 16, 2001–2019 (2004)
  Article CAS Google Scholar