A reverse genetic, nontransgenic approach to wheat crop improvement by TILLING (original) (raw)

References

  1. Fox, J.L. Monsanto cuts GM wheat. Nat. Biotechnol. 22, 645 (2004).
    Article CAS Google Scholar
  2. Henikoff, S., Till, B.J. & Comai, L. TILLING. Traditional mutagenesis meets functional genomics. Plant Physiol. 135, 630–636 (2004).
    Article CAS PubMed PubMed Central Google Scholar
  3. Colbert, T. et al. High-throughput screening for induced point mutations. Plant Physiol. 126, 480–484 (2001).
    Article CAS PubMed PubMed Central Google Scholar
  4. McCallum, C.M., Comai, L., Greene, E.A. & Henikoff, S. Targeting induced local lesions IN genomes (TILLING) for plant functional genomics. Plant Physiol. 123, 439–442 (2000).
    Article CAS PubMed PubMed Central Google Scholar
  5. Oleykowski, C.A., Bronson Mullins, C.R., Godwin, A.K. & Yeung, A.T. Mutation detection using a novel plant endonuclease. Nucleic Acids Res. 26, 4597–4602 (1998).
    Article CAS PubMed PubMed Central Google Scholar
  6. Wienholds, E. et al. Efficient target-selected mutagenesis in zebrafish. Genome Res. 13, 2700–2707 (2003).
    Article CAS PubMed PubMed Central Google Scholar
  7. Perry, J.A. et al. A TILLING reverse genetics tool and a web-accessible collection of mutants of the legume Lotus japonicus. Plant Physiol. 131, 866–871 (2003).
    Article CAS PubMed PubMed Central Google Scholar
  8. Smits, B.M., Van Zutphen, B.F., Plasterk, R.H. & Cuppen, E. Genetic variation in coding regions between and within commonly used inbred rat strains. Genome Res. 14, 1285–1290 (2004).
    Article CAS PubMed PubMed Central Google Scholar
  9. Nakamura, T., Yamamori, M., Hirano, H. & Hidaka, S. Identification of three Wx proteins in wheat (Triticum aestivum L.). Biochem. Genet. 31, 75–86 (1993).
    Article CAS PubMed Google Scholar
  10. Yamamori, M., Nakamura, T., Endo, T.R. & Nagamine, T. Waxy protein deficiency and chromosomal location of coding genes in common wheat. Theor. Appl. Genet. 89, 179–184 (1994).
    Article CAS PubMed Google Scholar
  11. Burrell, M.M. Starch: the need for improved quality or quantity—an overview. J. Exp. Bot. 54, 451–456 (2003).
    Article CAS PubMed Google Scholar
  12. Collins, G.N. Waxy maize from Upper Burma. Science 52, 48–51 (1920).
    Article CAS PubMed Google Scholar
  13. Graybosch, R.A. Waxy wheats: origin, properties, and prospects. Trends Food Sci. Technol. 9, 135–142 (1998).
    Article CAS Google Scholar
  14. Nakamura, T., Yamamori, M., Hirano, H., Hidaka, S. & Nagamine, T. Production of waxy (amylose-free) wheats. Mol. Gen. Genet. 248, 253–259 (1995).
    Article CAS PubMed Google Scholar
  15. Greene, E.A. et al. Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics 164, 731–740 (2003).
    CAS PubMed PubMed Central Google Scholar
  16. Stadler, L.J. Chromosome number and the mutation rate in Avena and Triticum. Proc. Natl. Acad. Sci. USA 12, 876–881 (1929).
    Article Google Scholar
  17. Nakamura, T., Vrinten, P., Saito, M. & Konda, M. Rapid classification of partial waxy wheats using PCR-based markers. Genome 45, 1150–1156 (2002).
    Article CAS PubMed Google Scholar
  18. Saito, M., Konda, M., Vrinten, P., Nakamura, K. & Nakamura, T. Molecular comparison of waxy null alleles in common wheat and identification of a unique null allele. Theor. Appl. Genet. 108, 1205–1211 (2004).
    Article CAS PubMed Google Scholar
  19. Anderson, P. Mutagenesis. Methods Cell Biol. 48, 31–58 (1995).
    Article CAS PubMed Google Scholar
  20. Ng, P.C. & Henikoff, S. SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res. 31, 3812–3814 (2003).
    Article CAS PubMed PubMed Central Google Scholar
  21. Henikoff, J.G. & Henikoff, S. Using substitution probabilities to improve position-specific scoring matrices. Comput. Appl. Biosci. 12, 135–143 (1996).
    CAS PubMed Google Scholar
  22. Taylor, N.E. & Greene, E.A. PARSESNP: A tool for the analysis of nucleotide polymorphisms. Nucleic Acids Res. 31, 3808–3811 (2003).
    Article CAS PubMed PubMed Central Google Scholar
  23. Yamamori, M., Nakamura, T. & Kiribuchi-Otobe, C. Waxy protein alleles in common and emmer wheat germplasm. Misc. Publ. Natl. Inst. Agrobiol. Resources 12, 57–104 (1998).
    Google Scholar
  24. Rodriguez-Quijano, M., Nieto-Taladriz, M.T. & Carrillo, J.M. Polymorphism of waxy proteins in Iberian hexaploid wheats. Plant Breeding 117, 341–344 (1998).
    Article CAS Google Scholar
  25. Marcoz-Ragot, C., Gateau, I., Koenig, J., Delaire, V. & Branlard, G. Allelic variants of granule-bound starch synthase proteins in European bread wheat varieties. Plant Breeding 119, 305–309 (2000).
    Article CAS Google Scholar
  26. Demeke, T., Hucl, P., Nair, R.B., Nakamura, T. & Chibbar, R.N. Evaluation of Canadian and other wheats for waxy proteins. Cereal Chemistry 74, 442–444 (1997).
    Article CAS Google Scholar
  27. Shariflou, M.R., Hassani, M.E. & Sharp, P.J. A PCR-based DNA marker for detection of mutant and normal alleles of the Wx-D1 gene of wheat. Plant Breeding 120, 121–124 (2001).
    Article CAS Google Scholar
  28. Miura, H., Araki, E. & Tarui, S. Amylose synthesis capacity of the three Wx genes of wheat cv. Chinese Spring. Euphytica 108, 91–95 (1999).
    Article CAS Google Scholar
  29. Miura, H., Wickramasinghe, M.H.A., Subasinghe, R.M., Araki, E. & Komae, K. Development of near-isogenic lines of wheat carrying different null Wx alleles and their starch properties. Euphytica 123, 353–359 (2002).
    Article CAS Google Scholar
  30. Graybosch, R.A., Souza, E., Berzonsky, W., Baenziger, P.S. & Chung, O. Functional properties of waxy wheat flours: genotypic and environmental effects. J. Cereal Sci. 38, 69–76 (2003).
    Article Google Scholar
  31. Mochida, K., Yamazaki, Y. & Ogihara, Y. Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags. Mol. Genet. Genomics 270, 371–377 (2003).
    Article CAS PubMed Google Scholar
  32. Yan, L. et al. The wheat VRN2 gene is a flowering repressor down-regulated by vernalization. Science 303, 1640–1644 (2004).
    Article CAS PubMed PubMed Central Google Scholar
  33. Hucl, P. & Matus-Cádiz, M. Isolation distances for minimizing out-crossing in spring wheat. Crop Sci. 41, 1348–1351 (2001).
    Article Google Scholar
  34. Neff, M.M., Turk, E. & Kalishman, M. Web-based primer design for single nucleotide polymorphism analysis. Trends Genet. 18, 613–615 (2002).
    Article CAS PubMed Google Scholar
  35. Konieczny, A. & Ausubel, F.M. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific markers. Plant J. 4, 403–410 (1993).
    Article CAS PubMed Google Scholar
  36. Ahloowalia, B.S., Maluszynski, M. & Nichterlein, K. Global impact of mutation-derived varieties. Euphytica 135, 187–204 (2004).
    Article Google Scholar
  37. Ahn, S., Anderson, J.A., Sorrells, M.E. & Tanksley, S.D. Homoeologous relationships of rice, wheat, and maize chromosomes. Mol. Gen. Genet. 243, 483–490 (1993).
    Article Google Scholar
  38. Gale, M.D. & Devos, K.M. Comparative genetics in the grasses. Proc. Natl. Acad. Sci. USA 95, 1971–1974 (1998).
    Article CAS PubMed Google Scholar
  39. Sorrells, M.E. et al. Comparative DNA sequence analysis of wheat and rice genomes. Genome Res. 13, 1818–1827 (2003).
    CAS PubMed PubMed Central Google Scholar
  40. Moore, G., Devos, K.M., Wang, Z. & Gale, M.D. Cereal genome evolution. Grasses, line up and form a circle. Curr. Biol. 5, 737–739 (1995).
    Article CAS PubMed Google Scholar
  41. Murai, J., Taira, T. & Ohta, D. Isolation and characterization of the three Waxy genes encoding the granule-bound starch synthase in hexaploid wheat. Gene 234, 71–79 (1999).
    Article CAS PubMed Google Scholar
  42. R Development Core Team. R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, Vienna, 2004).
  43. Chao, S. et al. RFLP-based genetic maps of wheat homoeologous group 7 chromosomes. Theor. Appl. Genet. 78, 495–504 (1989).
    Article CAS PubMed Google Scholar

Download references