Pervasive joint influence of epistasis and plasticity on mutational effects in Escherichia coli (original) (raw)
References
Wade, M.J. Epistasis as a genetic constraint within populations and an accelerant of adaptive divergence among them. in Epistasis and the Evolutionary Process (eds. Wolf, J.B., Brodie, E.D.I. & Wade, M.J.) 213–231 (Oxford Univ. Press, Oxford, UK, 2000). Google Scholar
Wade, M.J. & Goodnight, C.J. The theories of Fisher and Wright in the context of metapopulations: when nature does many small experiments. Evolution52, 1537–1553 (1998). ArticlePubMed Google Scholar
Otto, S.P. & Feldman, M.W. Deleterious mutations, variable epistatic interactions, and the evolution of recombination. Theor. Pop. Biol.51, 134–147 (1997). ArticleCAS Google Scholar
Hansen, T.F. & Wagner, G.P. Epistasis and the mutation load: a measurement theoretical approach. Genetics158, 477–485 (2001). CASPubMedPubMed Central Google Scholar
Kondrashov, F.A. & Kondrashov, A.S. Multidimensional epistasis and the disadvantage of sex. Proc. Natl. Acad. Sci. USA98, 12089–12092 (2001). ArticleCASPubMedPubMed Central Google Scholar
Whitlock, M.C., Phillips, P.C., Moore, F.B.-G. & Tonsor, S.J. Multiple fitness peaks and epistasis. Annu. Rev. Ecol. Syst.26, 601–629 (1995). Article Google Scholar
Fedorowicz, G.M., Fry, J.D., Anholt, R.R. & Mackay, T.F.C. Epistatic interactions between smell-impaired loci in Drosophila melanogaster. Genetics148, 1885–1891 (1998). CASPubMedPubMed Central Google Scholar
Lenski, R.E. et al. Epistatic effects of promoter and repressor functions of the Tn_10_ tetracycline-resistance operon on the fitness of Escherichia coli. Mol. Ecol.3, 127–135 (1994). ArticleCASPubMed Google Scholar
De Visser, J.A.G.M., Hoekstra, R.F. & van den Ende, H. Test of interaction between genetic markers that affect fitness in Aspergillus niger. Evolution51, 1499–1505 (1996). Article Google Scholar
Elena, S.F. & Lenski, R.E. Test of synergistic interactions among deleterious mutations in bacteria. Nature390, 395–398 (1997). ArticleCASPubMed Google Scholar
Elena, S.F., Ekunwe, L., Hajela, N., Oden, S.A. & Lenski, R.E. Distribution of fitness effects caused by random insertion mutations in Escherichia coli. Genetica102/103, 349–358 (1998). Article Google Scholar
Elena, S.F. & Lenski, R.E. Epistasis between new mutations and genetic background, and a test of genetic canalization. Evolution55, 1746–1752 (2001). ArticleCASPubMed Google Scholar
Remold, S.K. & Lenski, R.E. Contribution of individual random mutations to genotype-by-environment interactions in Escherichia coli. Proc. Natl. Acad. Sci. USA98, 11388–11393 (2001). ArticleCASPubMedPubMed Central Google Scholar
Kishony, R. & Leibler, S. Environmental stresses can alleviate the average deleterious effect of mutations. J. Biol.2, 14 (2003). ArticlePubMedPubMed Central Google Scholar
Miller, J.H. A Short Course in Bacterial Genetics (Cold Spring Harbor Laboratory Press, Plainview, New York, USA, 1992). Google Scholar
Kleckner, N., Bender, J. & Gottesman, S. Uses of transposons with emphasis on Tn_10_. Meth. Enzymol.204, 139–180 (1991). ArticleCAS Google Scholar
Lenski, R.E., Rose, M.R., Simpson, S.C. & Tadler, S.C. Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. Am. Nat.138, 1315–1341 (1991). Article Google Scholar
Travisano, M. & Lenski, R.E. Long-term experimental evolution in Escherichia coli. IV. Targets of selection and the specificity of adaptation. Genetics143, 15–26 (1996). CASPubMedPubMed Central Google Scholar
Travisano, M. Long-term experimental evolution in Escherichia coli. VI. Environmental constraints on adaptation and divergence. Genetics146, 471–479 (1997). CASPubMedPubMed Central Google Scholar
Schmalhausen, I.I. Factors of Evolution: The Theory of Stabilizing Selection (Blakiston, Philadelphia, USA, 1949). Google Scholar
Podlich, D.W. & Cooper, M. Modelling plant breeding programs as search strategies on a complex response surface. in Simulated Evolution and Learning (eds. McKay, B., Yao, X., Newton, C.S., Kim, J.-H. & Furuhashi, T.) 171–178 (Springer, Canberra, Australia, 1998). Google Scholar
Lenski, R.E. & Travisano, M. Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations. Proc. Natl. Acad. Sci. USA91, 6808–6814 (1994). ArticleCASPubMedPubMed Central Google Scholar
Lenski, R.E., Winkworth, C.L. & Riley, M.A. Rates of DNA sequence evolution in experimental populations of Escherichia coli during 20,000 generations. J. Mol. Evol.56, 498–508 (2003). ArticleCASPubMed Google Scholar
Lenski, R.E. Phenotypic and genomic evolution during a 20,000-generation experiment with the bacterium, Escherichia coli. Plant Breed. Rev.24, 225–265 (2004). Google Scholar
Levin, B.R., Stewart, F.M. & Chao, L. Resource-limited growth, competition and predation: a model and experimental studies with bacteria and bacteriophage. Am. Nat.111, 3–24 (1977). Article Google Scholar
Littell, R.C., Milliken, G.A., Stroup, W.W. & Wolfinger, R.D. SAS System for Mixed Models (SAS Institute, Cary, North Carolina, USA, 1996). Google Scholar
Sokal, R.R. & Rohlf, F.J. Biometry (Freeman, New York, USA, 1995). Google Scholar