Illingworth, R. et al. A novel CpG island set identifies tissue-specific methylation at developmental gene loci. PLoS Biol.6, e22 (2008). ArticlePubMedPubMed Central Google Scholar
Mohn, F. et al. Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. Mol. cell.30, 755–766 (2008). ArticleCASPubMed Google Scholar
Weber, M. et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat. Genet.39, 457–466 (2007). ArticleCASPubMed Google Scholar
Laurent, L. et al. Dynamic changes in the human methylome during differentiation. Genome Res.30, 320–331 (2010). Article Google Scholar
Cokus, S.J. et al. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature452, 215–219 (2008). ArticleCASPubMedPubMed Central Google Scholar
Lister, R. et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature462, 296–297 (2009). Article Google Scholar
Gu, H. et al. Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution. Nat. Methods7, 133–136 (2010). ArticleCASPubMedPubMed Central Google Scholar
Frommer, M. et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl. Acad. Sci. USA89, 1827–1831 (1992). ArticleCASPubMedPubMed Central Google Scholar
Bibikova, M. et al. Genome-wide DNA methylation profiling using Infinium assay. Epigenomics1, 177–200 (2009). ArticleCASPubMed Google Scholar
Brunner, A.L. et al. Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. Genome Res.19, 1044–1056 (2009). ArticleCASPubMedPubMed Central Google Scholar
Oda, M. et al. High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers. Nucleic Acids Res.37, 3829–3839 (2009). ArticleCASPubMedPubMed Central Google Scholar
Down, T.A. et al. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat. Biotechnol.26, 779–785 (2008). ArticleCASPubMedPubMed Central Google Scholar
Weber, M. et al. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet.37, 853–862 (2005). ArticleCASPubMed Google Scholar
Brinkman, A.B. et al. Whole-genome DNA methylation profiling using MethylCap-seq. Methods52, 232–236 (2010). ArticleCASPubMed Google Scholar
Rauch, T. & Pfeifer, G.P. Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer. Lab. Invest.85, 1172–1180 (2005). ArticleCASPubMed Google Scholar
Serre, D., Lee, B.H. & Ting, A.H. MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome. Nucleic Acids Res.38, 391–399 (2009). ArticlePubMedPubMed Central Google Scholar
Baranzini, S.E., et al. Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature464, 1351–1356 (2010). ArticleCASPubMedPubMed Central Google Scholar
Meissner, A. et al. Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis. Nucleic Acids Res.33, 5868–5877 (2005). ArticleCASPubMedPubMed Central Google Scholar
Ramsahoye, B.H. et al. Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a. Proc. Natl. Acad. Sci. USA97, 5237–5242 (2000). ArticleCASPubMedPubMed Central Google Scholar
Li, H., Ruan, J. & Durbin, R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res.18, 1851–1858 (2008). ArticleCASPubMedPubMed Central Google Scholar