The co-evolutionary genetics of ecological communities (original) (raw)

References

  1. Darwin, C. On the Origin of Species 95, 102 (Harvard Univ. Press, Cambridge, 1964).
    Google Scholar
  2. Futuyma, D. J. & Slatkin M. (eds) Coevolution (Sinauer Associates, Sunderland, 1983). One of the earliest and most influential edited volumes on co-evolution, which clearly frames many important ecological genetic questions.
    Google Scholar
  3. Thompson, J. N. The Geographic Mosaic of Coevolution (Univ. Chicago Press, Chicago, 2005). This book develops the leading evolutionary hypothesis of community ecology, that local co-adaptation is the fundamental unit of ecosystem function.
    Book Google Scholar
  4. Clayton, D. H. & Moore J. (eds) Host–Parasite Evolution: General Principles & Avian Models (Oxford Univ. Press, Oxford, 1997).
    Google Scholar
  5. Spaulding, A. E. & von Dohlen, C. D. Psyllid endosymbionts exhibit patterns of co-speciation with hosts and destabilizing substitutions in ribosomal RNA. Insect Mol. Biol. 10, 57–67 (2001).
    Article CAS PubMed Google Scholar
  6. Fuqua, C. & Winans, S. C. Conserved _cis_-acting promoter elements are required for density-dependent transcription of Agrobacterium tumefaciens conjugal transfer genes. J. Bacteriol. 178, 435–440 (1996).
    Article CAS PubMed PubMed Central Google Scholar
  7. Tollrian, R. & Harvell C. D. The Ecology and Evolution of Inducible Defenses (Princeton Univ. Press, Princeton, 1999).
    Google Scholar
  8. Boeing, W. J., Wissel, B. & Ramcharan, C. W. Costs and benefits of Daphnia defense against Chaoborus in nature. Can. J. Fish. Aquat. Sci. 62, 1286–1294 (2005).
    Article Google Scholar
  9. Lively, C. M. Predator-induced shell dimorphism in the acorn barnacle Chthamalus anisopoma. Evolution 40, 232–242 (1986).
    Article PubMed Google Scholar
  10. Verschoor, A. M., van der Stap, I., Helmsing, N. R., Lurling, M. & Van Donk, E. Inducible colony formation within the Scenedesmaceae: adaptive responses to infochemicals from two different herbivore taxa. J. Phycol. 40, 808–814 (2004).
    Article Google Scholar
  11. Van Donk, E., Lürling, M. & Lampert, W. in Ecology and Evolution of Inducible Defenses (eds Tollrian, R. & Harvell, C. D.) 89–103 (Princeton Univ. Press, Princeton, 1999).
    Google Scholar
  12. Kyong, H., Jang, M.-H., Joo, G.-J. & Takamura, N. Growth and morphological changes in Scenedesmus dimorphus induced by substances releases from grazers, Daphnia magna and Moina macrocopa. Kor. J. Limnol. 34, 285–291 (2001).
    Google Scholar
  13. Vos, M. et al. Inducible defenses and trophic structure. Ecology 85, 2783–2794 (2004).
    Article Google Scholar
  14. Fisher, R. A. The Genetical Theory of Natural Selection 2nd edn (Dover Press, New York, 1958).
    Google Scholar
  15. Lerner, I. M. Genetic Homeostasis (John Wiley & Sons, New York, 1954).
    Google Scholar
  16. van Valen, L. A new evolutionary law. Evol. Theory 1, 1–30 (1973).
    Google Scholar
  17. Webb, C. A complete classification of Darwinian extinction in ecological interactions. Am. Nat. 161, 181–205 (2003).
    Article PubMed Google Scholar
  18. Hubbell, S. P. The Unified Neutral Theory of Biodiversity and Biogeography (Princeton Univ. Press, Princeton, 2001).
    Google Scholar
  19. Whitham, T. G. et al. Community genetics: a consequence of the extended phenotype. Ecology 84, 559–573 (2003).
    Article Google Scholar
  20. Whitham, T. G. et al. A framework for community and ecosystem genetics: from genes to ecosystems. Nature Rev. Genet. 7, 510–523 (2006).
    Article CAS PubMed Google Scholar
  21. Wade, M. J. Community genetics and species interactions. Ecology 84, 583–585 (2003).
    Article Google Scholar
  22. Kiester, A. R., Lande, R. & Schemske, D. W. Models of coevolution and speciation in plants and their pollinators. Am. Nat. 124, 220–243 (1984). These authors established the principles that co-evolution takes place between traits and that the co-evolutionary effective population size is determined by the rarer species.
    Article Google Scholar
  23. Brodie III, E. D. & Ridenhour, B. J. Reciprocal selection at the phenotypic interface of coevolution. Integr. Comp. Biol. 43, 408–418 (2003).
    Article Google Scholar
  24. Ebert, D., Zschokke-Rohringer, C. D. & Carius, H.-J. Within- and between-population variation for resistance of Daphnia magna to the bacterial endoparasite, Pasteuria ramose. Proc. R. Soc. B Biol. Sci. 265, 2127–2134 (1998).
    Article Google Scholar
  25. Agrawal, A. & Lively, C. M. Infection genetics: gene-for-gene versus matching alleles models and all points in between. Evol. Ecol. Res. 4, 79–90 (2002).
    Google Scholar
  26. Via, S. & Lande, R. Genotype–environment interaction and the evolution of phenotypic plasticity. Evolution 39, 505–522 (1985).
    Article PubMed Google Scholar
  27. Falconer, D. S. The problem of environment and selection. Am. Nat. 86, 293–298 (1952).
    Article Google Scholar
  28. Stearns, S. C. The evolutionary significance of phenotypic plasticity. BioScience 39, 436–445 (1989).
    Article Google Scholar
  29. Schlichting, C. D. & Pigliucci, M. Phenotypic Evolution: A Reaction Norm Perspective (Sinauer Associates, Sunderland, 1998).
    Google Scholar
  30. Ahnesjo, J. & Forsman, A. Differential habitat selection by pygmy grasshopper color morphs; interactive effects of temperature and predator avoidance. Evol. Ecol. 20, 235–257 (2006).
    Article Google Scholar
  31. Curtsinger, J. W., Service, P. M. & Prout, T. Antagonistic pleiotropy, reversal of dominance, and genetic polymorphism. Am. Nat. 144, 210–228 (1994).
    Article Google Scholar
  32. Page, R. D. M. Tangled Trees: Phylogeny, Cospeciation, and Coevolution (Univ. of Chicago Press, Chicago, 2003). The most comprehensive and up-to-date reference on the issues of comparing phylogenies in co-evolutionary studies.
    Google Scholar
  33. Jousselin, E., Rasplus, J.-Y. & Kjellberg, F. Convergence and coevolution in a mutualism: evidence from a molecular phylogeny of Ficus. Evolution 57, 1255–1269 (2003).
    Article PubMed Google Scholar
  34. Herre, E. A. in Levels of Selection in Evolution (ed. Keller, L.) 209–237 (Princeton Univ. Press, Princeton, 1999).
    Google Scholar
  35. Clark, M. A., Moran, N. A., Baumann, P. & Wernegreen, J. J. Cospeciation between bacterial endosymbionts (Buchnera) and a recent radiation of aphids (Uroleucon) and pitfalls of testing for phylogenetic congruence. Evolution 54, 517–525 (2000).
    Article CAS PubMed Google Scholar
  36. Page, R. D. M. & Charleston, M. A. Trees within trees: phylogeny and historical associations. Trends Ecol. Evol. 13, 356–359 (1998).
    Article CAS PubMed Google Scholar
  37. Whitlock, M. C., Phillips, P. C. & Wade, M. J. Gene interaction affects the additive genetic variance in subdivided populations with migration and extinction. Evolution 72, 1758–1769 (1993).
    Article Google Scholar
  38. Brodie, E. D. Jr, Ridenhour, B. J. & Brodie III, E. D. The evolutionary response of predators to dangerous prey: hotspots and coldspots in the geographic mosaic of coevolution between garter snakes and newts. Evolution 56, 2067–2082 (2002).
    Article PubMed Google Scholar
  39. Wade, M. J. in Epistasis and the Evolutionary Process (eds Wolf, J., Brodie III, E. D. & Wade, M. J.) 213–231 (Oxford Univ. Press, Oxford, 2000).
    Google Scholar
  40. Wade, M. J. in Artificial Life VII Workshop Proceedings (eds Maley, C. C. & Boudreau, E.) 79–81 (MIT Press, Cambridge, 2000).
    Google Scholar
  41. Cockerham, C. C. & Weir, B. S. Digenic descent measures for finite populations. Genet. Res. 30, 121–147 (1977).
    Article Google Scholar
  42. Goodnight, C. J. On the effect of founder events on the epistatic genetic variance. Evolution 41, 80–91 (1987).
    Article PubMed Google Scholar
  43. Goodnight, C. J. Epistasis and the effect of founder events on the additive genetic variance. Evolution 42, 441–454 (1988).
    Article PubMed Google Scholar
  44. Wade, M. J. & Goodnight, C. J. Cyto-nuclear epistasis: two-locus random genetic drift in hermaphroditic and dioecious species. Evolution 60, 643–659 (2006).
    Article CAS PubMed Google Scholar
  45. Wade, M. J. in Key Words in Evolutionary Biology (eds Keller, E. F. & Lloyd, E. A.) 87–91 (Harvard Univ. Press, Cambridge, 1992).
    Google Scholar
  46. Wade, M. J., Winther, R. G., Agrawal, A. F. & Goodnight, C. J. Alternative definitions of epistasis: dependence and interaction. Trends Ecol. Evol. 16, 498–504 (2001).
    Article Google Scholar
  47. Phillips, P. C., Otto, S. P. & Whitlock, M. C. in Epistasis and the Evolutionary Process (eds Wolf, J. B., Brodie, E. D. & Wade, M. J.) 20–38 (Oxford Univ. Press, Oxford, 2000).
    Google Scholar
  48. Priest, N. K., Roach, D. A. and Galloway, L. F. Mating-induced recombination in fruit flies. Evolution 61, 160–167 (2007).
    Article PubMed Google Scholar
  49. Weir, B. S. Genetic Data Analysis II (Sinauer Associates, Sunderland, 1996).
    Google Scholar
  50. Cruzan, M. B. & Arnold, M. L. Consequences of cyto-nuclear epistasis and assortative mating for the genetic structure of hybrid populations. Heredity 82, 36–45 (1999).
    Article Google Scholar
  51. Wolf, J. B., Brodie III, E. D. & Wade, M. J. in Phenotypic Plasticity. Functional and Conceptual Approaches (eds DeWitt, T. & Scheiner, S.) (Oxford Univ. Press, Oxford, 2002).
    Google Scholar
  52. Blachford, A. & Agrawal, A. F. Assortative mating for fitness and the evolution of recombination. Evolution 60, 1337–1343 (2006).
    Article PubMed Google Scholar
  53. Lapolla, J. S., Schultz, T. R., Kjer, K. M. & Bischoff, J. F. Phylogenetic position of the ant genus Acropyga Roger (Hymenoptera: Formicidae) and the evolution of trophophoresy. Insect Syst. Evol. 37, 197–212 (2006).
    Article PubMed PubMed Central Google Scholar
  54. Braendle, C. et al. Developmental origin and evolution of bacteriocytes in the aphid — Buchnera symbiosis. PLoS Biol. 1, e21 (2003).
    Article PubMed PubMed Central Google Scholar
  55. Lynch, M. & Gabriel W. Mutation load and the survival of small populations. Evolution 44, 1725–1737 (1990).
    Article PubMed Google Scholar
  56. Charlesworth, D., Morgan, M. T. & Charlesworth, B. Mutation accumulation in finite outbreeding and inbreeding populations. Genet. Res. 61, 39–56 (1993).
    Article Google Scholar
  57. Paine, T. D., Raffa, K. F. & Harrington, T. C. Interactions among scolytid bark beetles, their associated fungi, and live host conifers. Annu. Rev. Entomol. 42, 179–206 (1997).
    Article CAS PubMed Google Scholar
  58. Wilson, D. S. & Knollenberg W. G. Adaptive indirect effects: the fitness of burying beetles with and without their phoretic mites. Evol. Ecol. 1, 139–159, (2005).
    Article Google Scholar
  59. Bergstrom, C. T. et al. in Genetic and Cultural Evolution of Cooperation (ed. Hammerstein, P.) 241–256 (MIT Press, Cambridge, 2003).
    Google Scholar
  60. Brandvain, Y., Barker, M. S. & Wade M. J. Gene co-inheritance and transfer. Science (in the press).
  61. Neuhauser, C. et al. Community genetics: expanding the synthesis of ecology and genetics. Ecology 84, 545–558 (2003).
    Article Google Scholar
  62. Clay, K. Hereditary symbiosis in the grass genus, Danthonia. New Phytol. 126, 223–231 (1994).
    Article Google Scholar
  63. Clayton, D. H., Bush, S. E., Goates, B. M. & Johnson, K. P. Host defense reinforces host–parasite cospeciation Proc. Natl Acad. Sci. USA 100, 15694–15699 (2003).
    Article CAS PubMed PubMed Central Google Scholar
  64. Hessen, D. O. & Van Donk, E. Morphological changes in Scenedesmus induced by substances released from Daphnia. Arch. Hydrobiol. 127, 129–140 (1993).
    Google Scholar
  65. Spaulding, A. W. & von Dohlen, C. D. Psyllid endosymbionts exhibit patterns of co-speciation with hosts and destabilizing substitutions in ribosomal RNA. Insect Mol. Biol. 10, 57–67 (2001).
    Article CAS PubMed Google Scholar

Download references