Improved R-factors for diffraction data analysis in macromolecular crystallography (original) (raw)
References
Blundell, T.L. & Johnson, L.N. Protein crystallography, p. 331. Academic Press, New York (1976). Google Scholar
McRee, D.E. Practical protein crystallography. p. 101. Academic Press, San Diego (1993). Google Scholar
Ladd, M.F.C. & Palmer, R.A. Structure determination by X-ray crystallography, Third ed. p. 509. Plenum Press, New York (1994). Google Scholar
Arndt, U.W., Crowther, R.A. & Mallet, J.F.W. A computer-linked cathode ray tube microdensitometer for X-ray crystallography. J. Phys. E:Sci. Instr.1, 510–516 (1968). ArticleCAS Google Scholar
Martin, P.R. & Hausinger, R.P. Site-directed mutagenesis of the active site cysteine in Klebsiella aerogenes urease. J. Biol. Chem.267, 20024–20027 (1992). CASPubMed Google Scholar
Jabri, E., Lee, M.H., Hausinger, R.P. & Karplus, P.A. Crystallization of urease. J. Mol. Biol.227, 934–937 (1992). ArticleCAS Google Scholar
Jabri, E., Carr, M.B., Hausinger, R.P. & Karplus, P.A. Crystal structure of urease. Science268, 998–1004 (1995). ArticleCAS Google Scholar
Hamlin, R.C. Multiwire area X-ray diffractometers. Meths Enzymol.114, 416–451 (1985). ArticleCAS Google Scholar
Otwinowski, Z. (1993) “Oscillation Data Reduction program”, in Proceedings of the CCP4 Study Weekend: Data Collection and Processing. 29-30 January 1993, compiled by L Sawyer, N. Isaacs and S. Bailey, SERC Daresbury Laboratory, England, pp.56–62 . Google Scholar
M.S. Weiss (1996) personal communication.
D., Gewirth (1995) The HKL manual. A description of the programs Denzo, XDisplayF, Scalepack. Edition 4, Yale University New Haven Connecticut, p.94. Google Scholar
Howard, A.J., Nielsen, C. & Xuong, N.H. Software for a diffractometer with multiwire area detector. Meths. Enzymol.114, 452–472 (1985). ArticleCAS Google Scholar
Mylvaganam, S.E., Bonaventura, C., Bonaventura, J. & Getzoff, E.D. Structural basis for the Root effect in haemoglobin. Nature Struct. Biol.3, 275–283 (1996). ArticleCAS Google Scholar
Shrive, A.K. et al. Three dimensional structure of human C-reactive protein. Nature Struct. Biol.3, 346–353 (1996). ArticleCAS Google Scholar
Kleywegt, G.T., Hoier, H. & Jones, T.A. A revaluation of the crystal structure of chloromuconate cycloisomserase. Acts Crystallogr.D52, 858–863 (1996). CAS Google Scholar
Desmyter, A. et al. Crystal structure of a camel single-domain VH antibody fragment in complex with lysozyme. Nature Struct. Biol.3, 803–811 (1996). ArticleCAS Google Scholar
Jabri, E. & Karplus, P.A. Structures of the Klebsiella aerogenes urease apoenzyme and two active site mutants. Biochemistry35, 10616–10626 (1996). ArticleCAS Google Scholar
Glover, I.D. et al. Structure determination of OppA at 2.3 Å resolution using multiple-wavelength anomalous dispersion methods. Acta Crystallogr.D51, 39–47 (1995). CAS Google Scholar
Van Duyne, G.D., Standaert, R.F., Karplus, P.A., Schreiber, S.L. & Clardy, J.C. Atomic structures of the human immunophilin FKBP-12 complexes with FK-506 and rapamycin. J. Mol. Biol.229, (1993).
Bruns, C.M. & Karplus, P.A. Refined crystal structure of spinach ferredoxin reductase at 1.7 Å resolution: oxidized, reduced and 2-phospho-5′-AMP bound states. J. Mol. Biol.247, 125–145 (1995). ArticleCAS Google Scholar
Gonschorek, W. Intensities, structure factors and their variances. Acta Crystallogr.A41, 189–195 (1985). ArticleCAS Google Scholar
Stenkamp, R.E. & Jensen, L.H. Resolution revisited: limit of detail in electron density maps. Acta Crystallogr.A40, 251–256 (1984). ArticleCAS Google Scholar
Brünger, A.T. The free _R_-value: a more objective statistic for crystallography. Meths Enzymol. in the press (AUTHOR: STATUS?).
Kleywegt, G.J. & Brünger, A.T. Checking your imagination: applications of the free R value. Structure4, 897–904 (1996). ArticleCAS Google Scholar
Diederichs, K. & Schulz, G.E. The refined structure of the complex between adenylate kinase from beef heart mitochondrial matrix and its substrate AMP at 1.85 Å resolution. J. Mol. Biol.217, 541–549 (1991). ArticleCAS Google Scholar
Boisvert, D.C., Wang, J., Otwinowski, Z., Horwich, A.L. & Sigler, P.B. The 2.4 Å crystal structure of the bacterial chaperonin GroEL complexed with ATPgS. Nature Struct. Biol.3, 170–177 (1996). ArticleCAS Google Scholar
Canady, M.A., Larson, S.B., Day, J. & McPherson, A. Crystal structure of turnip yellow mosaic virus. Nature Struct. Biol.3, 771–781 (1996). ArticleCAS Google Scholar
Garcia, K.C. et al. An αβ T cell receptor structure at 2.5 Å and its orientation in the TCR-MHC complex. Science.274, 209–219 (1996). ArticleCAS Google Scholar
Kabsch, W. Evaluation of Single-Crystal X-ray Diffraction Data from a Position-Sensitive Detector. J. Appl. Crystallogr.21, 916–924 (1988). ArticleCAS Google Scholar
Papoulis, A. Probability, random variables and stochastic processes. International Student Edition, McGraw Hill, Kogakusha Ltd, Tokyo, p. 147 (1965)