Using RNAi to catch Drosophila genes in a web of interactions: insights into cancer research (original) (raw)

References

• Adams MD and Sekelsky JJ . (2002). Nat. Rev. Genet., 3, 189–198.
• Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YH, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Gabor GL, Abril JF, Agbayani A, An HJ, Andrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies P, de Pablos B, Delcher A, Deng Z, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong F, Gorrell JH, Gu Z, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston KA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Ke Z, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravitz S, Kulp D, Lai Z, Lasko P, Lei Y, Levitsky AA, Li J, Li Z, Liang Y, Lin X, Liu X, Mattei B, McIntosh TC, McLeod MP, McPherson D, Merkulov G, Milshina NV, Mobarry C, Morris J, Moshrefi A, Mount SM, Moy M, Murphy B, Murphy L, Muzny DM, Nelson DL, Nelson DR, Nelson KA, Nixon K, Nusskern DR, Pacleb JM, Palazzolo M, Pittman GS, Pan S, Pollard J, Puri V, Reese MG, Reinert K, Remington K, Saunders RD, Scheeler F, Shen H, Shue BC, Siden-Kiamos I, Simpson M, Skupski MP, Smith T, Spier E, Spradling AC, Stapleton M, Strong R, Sun E, Svirskas R, Tector C, Turner R, Venter E, Wang AH, Wang X, Wang ZY, Wassarman DA, Weinstock GM, Weissenbach J, Williams SM, Woodage T, Worley KC, Wu D, Yang S, Yao QA, Ye J, Yeh RF, Zaveri JS, Zhan M, Zhang G, Zhao Q, Zheng L, Zheng XH, Zhong FN, Zhong W, Zhou X, Zhu S, Zhu X, Smith HO, Gibbs RA, Myers EW, Rubin GM and Venter JC . (2000). Science, 287, 2185–2195.
• Auerbach D, Thaminy S, Hottiger MO and Stagljar I . (2002). Proteomics, 2, 611–623.
• Bader GD and Hogue CW . (2003). BMC Bioinform., 4, 2.
• Bak M, Hansen C, Tommerup N and Larsen LA . (2003). Pharmacogenomics, 4, 411–429.
• Bale AE . (2002). Annu. Rev. Genomics Hum. Genet., 3, 47–65.
• Barabasi AL and Oltvai ZN . (2004). Nat. Rev. Genet., 5, 101–113.
• Belvin MP and Anderson KV . (1996). Annu. Rev. Cell Dev. Biol., 12, 393–416.
• Berns K, Hijmans EM, Mullenders J, Brummelkamp TR, Velds A, Heimerikx M, Kerkhoven RM, Madiredjo M, Nijkamp W, Weigelt B, Agami R, Ge W, Cavet G, Linsley PS, Beijersbergen RL and Bernards R . (2004). Nature, 428, 431–437.
• Bernstein E, Caudy AA, Hammond SM and Hannon GJ . (2001). Nature, 409, 363–366.
• Bernstein E, Kim SY, Carmell MA, Murchison EP, Alcorn H, Li MZ, Mills AA, Elledge SJ, Anderson KV and Hannon GJ . (2003). Nat. Genet., 35, 215–217.
• Billadeau DD . (2002). Int. J. Gastrointest. Cancer, 31, 5–13.
• Bos JL . (1989). Cancer Res., 49, 4682–4689.
• Boutros M, Kiger AA, Armknecht S, Kerr K, Hild M, Koch B, Haas SA, Consortium HF, Paro R and Perrimon N . (2004). Science, 303, 832–835.
• Bray D . (2003). Science, 301, 1864–1865.
• Buckholz RG, Simmons CA, Stuart JM and Weiner MP . (1999). J. Mol. Microbiol. Biotechnol., 1, 135–140.
• Carmell MA and Hannon GJ . (2004). Nat. Struct. Mol. Biol., 11, 214–218.
• Carpenter AE and Sabatini DM . (2004). Nat. Rev. Genet., 5, 11–22.
• Clemens JC, Worby CA, Simonson-Leff N, Muda M, Maehama T, Hemmings BA and Dixon JE . (2000). Proc. Natl. Acad. Sci. USA, 97, 6499–6503.
• Denli AM and Hannon GJ . (2003). Trends Biochem. Sci., 28, 196–201.
• Diaz-Camino C, Risseeuw EP, Liu E and Crosby WL . (2003). Anal. Biochem., 316, 171–174.
• Dykxhoorn DM, Novina CD and Sharp PA . (2003). Nat. Rev. Mol. Cell Biol., 4, 457–467.
• Evans CJ, Hartenstein V and Banerjee U . (2003). Dev. Cell, 5, 673–690.
• Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, Remor M, Hofert C, Schelder M, Brajenovic M, Ruffner H, Merino A, Klein K, Hudak M, Dickson D, Rudi T, Gnau V, Bauch A, Bastuck S, Huhse B, Leutwein C, Heurtier MA, Copley RR, Edelmann A, Querfurth E, Rybin V, Drewes G, Raida M, Bouwmeester T, Bork P, Seraphin B, Kuster B, Neubauer G and Superti-Furga G . (2002). Nature, 415, 141–147.
• Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley Jr RL, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP, Chant J and Rothberg JM . (2003). Science, 302, 1727–1736.
• Grimm S . (2004). Nat. Rev. Genet., 5, 179–189.
• Hammond SM, Bernstein E, Beach D and Hannon GJ . (2000). Nature, 404, 293–296.
• Hannon GJ . (2002). Nature, 418, 244–251.
• Hartwell LH, Hopfield JJ, Leibler S and Murray AW . (1999). Nature, 402, C47–52.
• Hild M, Beckmann B, Haas SA, Koch B, Solovyev V, Busold C, Fellenberg K, Boutros M, Vingron M, Sauer F, Hoheisel JD and Paro R . (2003). Genome Biol., 5, R3.
• Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novere N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J and Wang J . (2003). Bioinformatics, 19, 524–531.
• Kamath RS and Ahringer J . (2003). Methods, 30, 313–321.
• Kapoor TM, Mayer TU, Coughlin ML and Mitchison TJ . (2000). J. Cell Biol., 150, 975–988.
• Kennerdell JR and Carthew RW . (1998). Cell, 95, 1017–1026.
• Ketting RF, Fischer SE, Bernstein E, Sijen T, Hannon GJ and Plasterk RH . (2001). Genes Dev., 15, 2654–2659.
• Kiger A, Baum B, Jones S, Jones M, Coulson A, Echeverri C and Perrimon N . (2003). J. Biol., 2, 27.
• Li H and Wang W . (2003). Curr. Opin. Genet. Dev., 13, 611–616.
• Lum L, Yao S, Mozer B, Rovescalli A, Von Kessler D, Nirenberg M and Beachy PA . (2003). Science, 299, 2039–2045.
• Martinez LA, Naguibneva I, Lehrmann H, Vervisch A, Tchenio T, Lozano G and Harel-Bellan A . (2002). Proc. Natl. Acad. Sci. USA, 99, 14849–14854.
• Matise MP and Joyner AL . (1999). Oncogene, 18, 7852–7859.
• Mayer TU, Kapoor TM, Haggarty SJ, King RW, Schreiber SL and Mitchison TJ . (1999). Science, 286, 971–974.
• Mercurio AM, Bachelder RE, Rabinovitz I, O’Connor KL, Tani T and Shaw LM . (2001). Surg. Oncol. Clin. N. Am., 10, 313–328, viii–ix..
• Michelson AM . (2003). Sci. STKE, 2003, PE30.
• Milhavet O, Gary DS and Mattson MP . (2003). Pharmacol. Rev., 55, 629–648.
• Milo R, Itzkovitz S, Kashtan N, Levitt R, Shen-Orr S, Ayzenshtat I, Sheffer M and Alon U . (2004). Science, 303, 1538–1542.
• Miyagishi M and Taira K . (2003). Oligonucleotides, 13, 325–333.
• Montell DJ . (1999). Cell Biochem. Biophys., 31, 219–229.
• Murone M, Rosenthal A and de Sauvage FJ . (1999). Exp. Cell Res., 253, 25–33.
• Nagy A, Sandmeyer S and Plasterk R . (2003). Nat. Genet., 33, 276–284.
• Oldak M, Grzela T, Lazarczyk M, Malejczyk J and Skopinski P . (2001). Int. J. Mol. Med., 8, 445–452.
• Oliver B and Leblanc B . (2003). Genome Biol., 5, 204.
• Paddison PJ and Hannon GJ . (2002). Cancer Cell, 2, 17–23.
• Paddison PJ, Caudy AA, Bernstein E, Hannon GJ and Conklin DS . (2002). Genes Dev., 16, 948–958.
• Paddison PJ, Silva JM, Conklin DS, Schlabach M, Li M, Aruleba S, Balija V, O'Shaughnessy A, Gnoj L, Scobie K, Chang K, Westbrook T, Cleary M, Sachidanandam R, McCombie WR, Elledge SJ and Hannon GJ . (2004). Nature, 428, 427–431.
• Pagliarini RA and Xu T . (2003). Science, 302, 1227–1231.
• Pandur P, Maurus D and Kuhl M . (2002). BioEssays, 24, 881–884.
• Puig O, Caspary F, Rigaut G, Rutz B, Bouveret E, Bragado-Nilsson E, Wilm M and Seraphin B . (2001). Methods, 24, 218–229.
• Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M and Seraphin B . (1999). Nat. Biotechnol., 17, 1030–1032.
• Rosamond J and Allsop A . (2000). Science, 287, 1973–1976.
• Rubin GM . (2000). Novartis Found. Symp., 229, 79–82, discussion 82–83.
• Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, Birney E, Boguski MS, Brody T, Brokstein P, Celniker SE, Chervitz SA, Coates D, Cravchik A, Gabrielian A, Galle RF, Gelbart WM, George RA, Goldstein LS, Gong F, Guan P, Harris NL, Hay BA, Hoskins RA, Li J, Li Z, Hynes RO, Jones SJ, Kuehl PM, Lemaitre B, Littleton JT, Morrison DK, Mungall C, O'Farrell PH, Pickeral OK, Shue C, Vosshall LB, Zhang J, Zhao Q, Zheng XH and Lewis S . (2000). Science, 287, 2204–2215.
• Sanchez-Carbayo M and Cordon-Cardo C . (2003). Br. J. Cancer, 89, 2172–2177.
• Scherr M, Morgan MA and Eder M . (2003). Curr. Med. Chem., 10, 245–256.
• Schmitz AA, Govek EE, Bottner B and Van Aelst L . (2000). Exp. Cell Res., 261, 1–12.
• Sharp PA . (1999). Genes Dev., 13, 139–141.
• Spirin V and Mirny LA . (2003). Proc. Natl. Acad. Sci. USA, 100, 12123–12128.
• St Johnston D . (2002). Nat. Rev. Genet., 3, 176–188.
• Stewart SA, Dykxhoorn DM, Palliser D, Mizuno H, Yu EY, An DS, Sabatini DM, Chen IS, Hahn WC, Sharp PA, Weinberg RA and Novina CD . (2003). RNA, 9, 493–501.
• Takai Y, Kaibuchi K, Sasaki T, Tanaka K, Shirataki H and Nakanishi H . (1994). Princess Takamatsu Symp., 24, 338–350.
• Tewari M, Hu PJ, Ahn JS, Ayivi-Guedehoussou N, Vidalain PO, Li S, Milstein S, Armstrong CM, Boxem M, Butler MD, Busiguina S, Rual JF, Ibarrola N, Chaklos ST, Bertin N, Vaglio P, Edgley ML, King KV, Albert PS, Vandenhaute J, Pandey A, Riddle DL, Ruvkun G and Vidal M . (2004). Mol. Cell, 13, 469–482.
• van Duin M, Woolson H, Mallinson D and Black D . (2003). Biochem. Soc. Trans., 31, 429–432.
• van Es JH, Barker N and Clevers H . (2003). Curr. Opin. Genet. Dev., 13, 28–33.
• Venter JC, Adams MD, Sutton GG, Kerlavage AR, Smith HO and Hunkapiller M . (1998). Science, 280, 1540–1542.
• Wajant H and Scheurich P . (2004). Prog. Mol. Subcell. Biol., 34, 47–72.
• Xia H, Mao Q, Paulson HL and Davidson BL . (2002). Nat. Biotechnol., 20, 1006–1010.
• Zheng L, Liu J, Batalov S, Zhou D, Orth A, Ding S and Schultz PG . (2004). Proc. Natl. Acad. Sci. USA, 101, 135–140.

Download references