The human Mi-2/NuRD complex and gene regulation (original) (raw)
Bagheri-Yarmand R, Talukder AH, Wang RA, Vadlamudi RK, Kumar R . (2004). Metastasis-associated protein 1 deregulation causes inappropriate mammary gland development and tumorigenesis. Development131: 3469–3479. ArticleCAS Google Scholar
Ballestar E, Pile LA, Wassarman DA, Wolffe AP, Wade PA . (2001). A Drosophila MBD family member is a transcriptional corepressor associated with specific genes. Eur J Biochem268: 5397–5406. ArticleCAS Google Scholar
Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ et al. (2005). Genomic maps and comparative analysis of histone modifications in human and mouse. Cell120: 169–181. ArticleCAS Google Scholar
Boeger H, Griesenbeck J, Strattan JS, Kornberg RD . (2004). Removal of promoter nucleosomes by disassembly rather than sliding in vivo. Mol Cell14: 667–673. ArticleCAS Google Scholar
Bowen NJ, Fujita N, Kajita M, Wade PA . (2004). Mi-2/NuRD: multiple complexes for many purposes. Biochim Biophys Acta1677: 52–57. ArticleCAS Google Scholar
Brackertz M, Boeke J, Zhang R, Renkawitz R . (2002). Two highly related p66 proteins comprise a new family of potent transcriptional repressors interacting with MBD2 and MBD3. J Biol Chem277: 40958–40966. ArticleCAS Google Scholar
Brackertz M, Gong Z, Leers J, Renkawitz R . (2006). p66alpha and p66beta of the Mi-2/NuRD complex mediate MBD2 and histone interaction. Nucleic Acids Res34: 397–406. ArticleCAS Google Scholar
Brehm A, Langst G, Kehle J, Clapier CR, Imhof A, Eberharter A et al. (2000). dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties. EMBO J19: 4332–4341. ArticleCAS Google Scholar
Cui Y, Niu A, Pestell R, Kumar R, Curran EM, Liu Y et al. (2006). Metastasis-associated protein 2 is a repressor of estrogen receptor alpha whose overexpression leads to estrogen-independent growth of human breast cancer cells. Mol Endocrinol20: 2020–2035. ArticleCAS Google Scholar
Eisen JA, Sweder KS, Hanawalt PC . (1995). Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res23: 2715–2723. ArticleCAS Google Scholar
Feng Q, Zhang Y . (2001). The MeCP1 complex represses transcription through preferential binding, remodeling, and deacetylating methylated nucleosomes. Genes Dev15: 827–832. CASPubMedPubMed Central Google Scholar
Feng Q, Cao R, Xia L, Erdjument-Bromage H, Tempst P, Zhang Y . (2002). Identification and functional characterization of the p66/p68 components of the MeCP1 complex. Mol Cell Biol22: 536–546. ArticleCAS Google Scholar
Fraga MF, Ballestar E, Montoya G, Taysavang P, Wade PA, Esteller M . (2003). The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties. Nucleic Acids Res31: 1765–1774. ArticleCAS Google Scholar
Fujita N, Jaye DL, Kajita M, Geigerman C, Moreno CS, Wade PA . (2003). MTA3, a Mi-2/NuRD complex subunit, regulates an invasive growth pathway in breast cancer. Cell113: 207–219. ArticleCAS Google Scholar
Fujita N, Kajita M, Taysavang P, Wade PA . (2004). Hormonal regulation of metastasis-associated protein 3 transcription in breast cancer cells. Mol Endocrinol18: 2937–2949. ArticleCAS Google Scholar
Fukaki H, Taniguchi N, Tasaka M . (2006). PICKLE is required for SOLITARY-ROOT/IAA14-mediated repression of ARF7 and ARF19 activity during Arabidopsis lateral root initiation. Plant J48: 380–389. ArticleCAS Google Scholar
Ge Q, Nilasena DS, O'Brien CA, Frank MB, Targoff IN . (1995). Molecular analysis of a major antigenic region of the 240-kD protein of Mi-2 autoantigen. J Clin Invest96: 1730–1737. ArticleCAS Google Scholar
Grozinger CM, Schreiber SL . (2002). Deacetylase enzymes: biological functions and the use of small-molecule inhibitors. Chem Biol9: 3–16. ArticleCAS Google Scholar
Guschin D, Wade PA, Kikyo N, Wolffe AP . (2000). ATP-dependent histone octamer mobilization and histone deacetylation mediated by the Mi-2 chromatin remodeling complex. Biochemistry39: 5238–5245. ArticleCAS Google Scholar
Hassig CA, Fleischer TC, Billin AN, Schreiber SL, Ayer DE . (1997). Histone deacetylase activity is required for full transcriptional repression by mSin3A. Cell89: 341–347. ArticleCAS Google Scholar
Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD et al. (2007). Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat Genet39: 311–318. ArticleCAS Google Scholar
Hendrich B, Bird A . (1998). Identification and characterization of a family of mammalian methyl-CpG binding proteins. Mol Cell Biol18: 6538–6547. ArticleCAS Google Scholar
Hendrich B, Tweedie S . (2003). The methyl-CpG binding domain and the evolving role of DNA methylation in animals. Trends Genet19: 269–277. ArticleCAS Google Scholar
Hendrich B, Guy J, Ramsahoye B, Wilson VA, Bird A . (2001). Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development. Genes Dev15: 710–723. ArticleCAS Google Scholar
Hill CL, Zhang Y, Sigurgeirsson B, Pukkala E, Mellemkjaer L, Airio A et al. (2001). Frequency of specific cancer types in dermatomyositis and polymyositis: a population-based study. Lancet357: 96–100. ArticleCAS Google Scholar
Humphrey GW, Wang Y, Russanova VR, Hirai T, Qin J, Nakatani Y et al. (2001). Stable histone deacetylase complexes distinguished by the presence of SANT domain proteins CoREST/kiaa0071 and Mta-L1. J Biol Chem276: 6817–6824. ArticleCAS Google Scholar
Kaji K, Caballero IM, MacLeod R, Nichols J, Wilson VA, Hendrich B . (2006). The NuRD component Mbd3 is required for pluripotency of embryonic stem cells. Nat Cell Biol8: 285–292. ArticleCAS Google Scholar
Kaji K, Nichols J, Hendrich B . (2007). Mbd3, a component of the NuRD co-repressor complex, is required for development of pluripotent cells. Development134: 1123–1132. ArticleCAS Google Scholar
Kon C, Cadigan KM, da Silva SL, Nusse R . (2005). Developmental roles of the Mi-2/NURD-associated protein p66 in Drosophila. Genetics169: 2087–2100. ArticleCAS Google Scholar
Kumar R . (2003). Another tie that binds the MTA family to breast cancer. Cell113: 142–143. ArticleCAS Google Scholar
Kumar R, Wang RA, Mazumdar A, Talukder AH, Mandal M, Yang Z et al. (2002). A naturally occurring MTA1 variant sequesters oestrogen receptor-alpha in the cytoplasm. Nature418: 654–657. ArticleCAS Google Scholar
Kurdistani SK, Tavazoie S, Grunstein M . (2004). Mapping global histone acetylation patterns to gene expression. Cell117: 721–733. ArticleCAS Google Scholar
Lagger G, O'Carroll D, Rembold M, Khier H, Tischler J, Weitzer G et al. (2002). Essential function of histone deacetylase 1 in proliferation control and CDK inhibitor repression. EMBO J21: 2672–2681. ArticleCAS Google Scholar
Le Guezennec X, Vermeulen M, Brinkman AB, Hoeijmakers WA, Cohen A, Lasonder E et al. (2006). MBD2/NuRD and MBD3/NuRD, two distinct complexes with different biochemical and functional properties. Mol Cell Biol26: 843–851. ArticleCAS Google Scholar
Loyola A, Almouzni G . (2004). Histone chaperones, a supporting role in the limelight. Biochim Biophys Acta1677: 3–11. ArticleCAS Google Scholar
Luo RX, Postigo AA, Dean DC . (1998). Rb interacts with histone deacetylase to repress transcription. Cell92: 463–473. ArticleCAS Google Scholar
Magnaghi-Jaulin L, Groisman R, Naguibneva I, Robin P, Lorain S, Le Villain JP et al. (1998). Retinoblastoma protein represses transcription by recruiting a histone deacetylase [see comments]. Nature391: 601–605. ArticleCAS Google Scholar
Manavathi B, Kumar R . (2007). Metastasis tumor antigens, an emerging family of multifaceted master coregulators. J Biol Chem282: 1529–1533. ArticleCAS Google Scholar
Marhold J, Brehm A, Kramer K . (2004). The Drosophila methyl-DNA binding protein MBD2/3 interacts with the NuRD complex via p55 and MI-2. BMC Mol Biol5: 20. Article Google Scholar
Mazumdar A, Wang RA, Mishra SK, Adam L, Bagheri-Yarmand R, Mandal M et al. (2001). Transcriptional repression of oestrogen receptor by metastasis-associated protein 1 corepressor. Nat Cell Biol3: 30–37. ArticleCAS Google Scholar
Metivier R, Penot G, Hubner MR, Reid G, Brand H, Kos M et al. (2003). Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell115: 751–763. ArticleCAS Google Scholar
Mishra SK, Talukder AH, Gururaj AE, Yang Z, Singh RR, Mahoney MG et al. (2004). Upstream determinants of estrogen receptor-alpha regulation of metastatic tumor antigen 3 pathway. J Biol Chem279: 32709–32715. ArticleCAS Google Scholar
Nagy L, Kao HY, Chakravarti D, Lin RJ, Hassig CA, Ayer DE et al. (1997). Nuclear receptor repression mediated by a complex containing SMRT, mSin3A, and histone deacetylase. Cell89: 373–380. ArticleCAS Google Scholar
Pencil SD, Toh Y, Nicolson GL . (1993). Candidate metastasis-associated genes of the rat 13762NF mammary adenocarcinoma. Breast Cancer Res Treat25: 165–174. ArticleCAS Google Scholar
Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, Lee TI et al. (2005). Genome-wide map of nucleosome acetylation and methylation in yeast. Cell122: 517–527. ArticleCAS Google Scholar
Qian YW, Wang YC, Hollingsworth Jr RE, Jones D, Ling N, Lee EY . (1993). A retinoblastoma-binding protein related to a negative regulator of Ras in yeast. Nature364: 648–652. ArticleCAS Google Scholar
Reinke H, Horz W . (2003). Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter. Mol Cell11: 1599–1607. ArticleCAS Google Scholar
Saito M, Ishikawa F . (2002). The mCpG-binding domain of human MBD3 does not bind to mCpG but interacts with NuRD/Mi2 components HDAC1 and MTA2. J Biol Chem277: 35434–35439. ArticleCAS Google Scholar
Schubeler D, MacAlpine DM, Scalzo D, Wirbelauer C, Kooperberg C, van Leeuwen F et al. (2004). The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. Genes Dev18: 1263–1271. Article Google Scholar
Seelig HP, Moosbrugger I, Ehrfeld H, Fink T, Renz M, Genth E . (1995). The major dermatomyositis-specific Mi-2 autoantigen is a presumed helicase involved in transcriptional activation. Arthritis Rheum38: 1389–1399. ArticleCAS Google Scholar
Sondek J, Bohm A, Lambright DG, Hamm HE, Sigler PB . (1996). Crystal structure of a G-protein beta gamma dimer at 21A resolution. Nature379: 369–374. ArticleCAS Google Scholar
Taunton J, Hassig CA, Schreiber SL . (1996). A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p. Science272: 408–411. ArticleCAS Google Scholar
Tong JK, Hassig CA, Schnitzler GR, Kingston RE, Schreiber SL . (1998). Chromatin deacetylation by an ATP-dependent nucleosome remodelling complex. Nature395: 917–921. ArticleCAS Google Scholar
Tyler JK, Kadonaga JT . (1999). The ‘dark side’ of chromatin remodeling: repressive effects on transcription. Cell99: 443–446. ArticleCAS Google Scholar
von Zelewsky T, Palladino F, Brunschwig K, Tobler H, Hajnal A, Muller F . (2000). The C. elegans Mi-2 chromatin remodeling proteins function in vulval cell fate determination. Development127: 5277–5284. CASPubMed Google Scholar
Wade PA, Gegonne A, Jones PL, Ballestar E, Aubry F, Wolffe AP . (1999). Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation [see comments]. Nat Genet23: 62–66. ArticleCAS Google Scholar
Wade PA, Jones PL, Vermaak D, Wolffe AP . (1998). A multiple subunit Mi-2 histone deacetylase from Xenopus laevis cofractionates with an associated Snf2 superfamily ATPase. Curr Biol8: 843–846. ArticleCAS Google Scholar
Wang HB, Zhang Y . (2001). Mi2, an auto-antigen for dermatomyositis, is an ATP-dependent nucleosome remodeling factor. Nucleic Acids Res29: 2517–2521. ArticleCAS Google Scholar
Williams CJ, Naito T, Arco PG, Seavitt JR, Cashman SM, De Souza B et al. (2004). The chromatin remodeler Mi-2beta is required for CD4 expression and T cell development. Immunity20: 719–733. ArticleCAS Google Scholar
Woodage T, Basrai MA, Baxevanis AD, Hieter P, Collins FS . (1997). Characterization of the CHD family of proteins. Proc Natl Acad Sci USA94: 11472–11477. ArticleCAS Google Scholar
Xue Y, Wong J, Moreno GT, Young MK, Cote J, Wang W . (1998). NURD, a novel complex with both ATP-dependent chromatin-remodeling and histone deacetylase activities. Mol Cell2: 851–861. ArticleCAS Google Scholar
Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ et al. (2005). Genome-scale identification of nucleosome positions in S. cerevisiae. Science309: 626–630. ArticleCAS Google Scholar
Zhang H, Singh RR, Talukder AH, Kumar R . (2006). Metastatic tumor antigen 3 is a direct corepressor of the Wnt4 pathway. Genes Dev20: 2943–2948. ArticleCAS Google Scholar
Zhang Y, Iratni R, Erdjument-Bromage H, Tempst P, Reinberg D . (1997). Histone deacetylases and SAP18, a novel polypeptide, are components of a human Sin3 complex. Cell89: 357–364. ArticleCAS Google Scholar
Zhang Y, LeRoy G, Seelig HP, Lane WS, Reinberg D . (1998). The dermatomyositis-specific autoantigen Mi2 is a component of a complex containing histone deacetylase and nucleosome remodeling activities. Cell95: 279–289. ArticleCAS Google Scholar
Zhang Y, Ng HH, Erdjument-Bromage H, Tempst P, Bird A, Reinberg D . (1999). Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation. Genes Dev13: 1924–1935. ArticleCAS Google Scholar