GenomePixelizer—a visualization program for comparative genomics within and between species (original) (raw)
Journal Article
,
Department of Vegetable Crops, University of California, Davis, CA 95616, USA
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,
Department of Vegetable Crops, University of California, Davis, CA 95616, USA
Search for other works by this author on:
Department of Vegetable Crops, University of California, Davis, CA 95616, USA
Search for other works by this author on:
Revision received:
28 September 2001
Accepted:
12 October 2001
Published:
01 February 2002
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Abstract
Summary: GenomePixelizer is a visualization tool that generates custom images of the physical or genetic positions of specified sets of genes in whole genomes or parts of genomes. Multiple sets of genes can be shown simultaneously with user-defined characteristics displayed. It allows the analysis of duplication events within and between species based on sequence similarities. The program is written in Tcl/Tk and works on any platform that supports the Tcl/Tk toolkit. GenomePixelizer generates HTML ImageMap tags for each gene in the image allowing links to databases. Images can be saved and presented on web pages.
Availability: GenomePixelizer is freely available at http://niblrrs.ucdavis.edu/GenomePixelizer/GenomePixelizer_Welcome.html
Contact: akozik@atgc.org
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© Oxford University Press 2002
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