DNaseI Hypersensitivity Analysis of Chromatin Structure (original) (raw)

References

1. King, I. F. and Kingston, R. E. 2001. Specifying transcription. Nature 414, 858–861.
   Google Scholar
2. Ahmad, K. and Henikoff, S. 2002. Epigenetic consequences of nucleosome dynamics. Cell 111, 281–284.
   Google Scholar
3. Bier, E., Hashimoto, Y., Greene, M. I., and Maxam, A. M. 1985. Active T-cell receptor genes have intron deoxyribonuclease hypersensitive sites. Science 229, 528–534.
   Google Scholar
4. Elgin, S. C. 1981. DNAase I-hypersensitive sites of chromatin. Cell 27, 413–415.
   Google Scholar
5. Kok, K., Snippe, L., Ab, G., and Gruber, M. 1985. Nuclease-hypersensitive sites in chromatin of the estrogen-inducible apoVLDL II gene of chicken. Nucleic Acids Res 13, 5189–5202.
   Google Scholar
6. Orkin, S. H. 1995. Regulation of globin gene expression in erythroid cells. Eur. J. Biochem. 231, 271–281.
   Google Scholar
7. Reeves, R. 1988. Active chromatin structure, in Chromosomes and Chromatin, (Adolph, K., ed.), CRC, Boca Raton FL, pp.110–125.
   Google Scholar
8. Wolffe, A. P. 1998. Chromatin: Structure and Function. Academic, San Diego, CA, pp.199–212.
   Google Scholar
9. Agarwal, S. and Rao, A. 1998. Modulation of chromatin structure regulates cytokine gene expression during T cell differentiation. Immunity 9, 765–775.
   Google Scholar
10. Bird, A. P. and Wolffe, A. P. 1999. Methylation-induced repression—belts, braces, and chromatin. Cell 99, 451–454.
    Google Scholar
11. Lu, Q., Ray, D., Deng, C, et al. (2003) DNA methylation and chromatin structure regulate T cell perforin gene expression. J Immunol. 170, 5124–5132.
    PubMed CAS Google Scholar
12. Lachner, M. O’Carroll D, Rea S, Mechtler K, Jenuwein T. (2001) Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature 410, 116–120.
    Article PubMed CAS Google Scholar
13. Ayyanathan, K., Lechner M.S., Bell, P., et al. (2003) Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation. Genes Dev. 17, 1855–1869.
    Article PubMed CAS Google Scholar
14. Lu, Q., Ray, D., Gutsch, D., and Richardson, B. 2002. Effect of DNA methylation and chromatin structure on ITGAL expression. Blood 99, 4503–4508.
    Google Scholar
15. Gregory, R. I., O’Neill, L. P., Randall, T. E., et al. (2002) Inhibition of histone deacetylases alters allelic chromatin conformation at the imprinted U2af1-rs1 locus in mouse embryonic stem cells. J. Biol. Chem. 277, 11,728–11,734.
    Article PubMed CAS Google Scholar
16. Schubeler, D., Lorincz, M.C., Cimbora, D.M., et al. 2000. Genomic targeting of methylated DNA: influence of methylation on transcription, replication, chromatin structure, and histone acetylation. Mol. Cell. Biol. 20, 9103–9112.
    Article PubMed CAS Google Scholar
17. Stimson, K. M. and Vertino, P. M. 2002. Methylation-mediated silencing of TMS1/ASC is accompanied by histone hypoacetylation and CpG island-localized changes in chromatin architecture. J. Biol. Chem. 277, 4951–4958.
    Google Scholar
18. Brown, T. 1993. Analysis of DNA sequences by blotting and hybridization, in Current Protocols in Molecular Biology, (Ausubel, B.R., Kingston, F., Moore, R., Seidman, D., Smith, J., and Struhl, K., eds.) John Wiley & Sons, New York. pp.2.9.1–2.9.15.
    Google Scholar

Download references