npy2bdv: writing numpy arrays to Fiji/BigDataViewer HDF5 files (original) (raw)
Published August 4, 2020 | Version v1.0.0
Software Open
- 1. @PreibischLab
Description
Bridging library between Python and HDF5 file format used in Fiji/BigDataViewer/BigStitcher community.
Writes image stacks (numpy 3d-arrays) into HDF5 files with rich meta-information saved in an accompanying XML file. Also supports basic reading from HDF5 into numpy arrays.
Default options are optimized for high-speed writing in custom microscopes, e.g. streaming images at full camera speed.
Files
nvladimus/npy2bdv-v1.0.0.zip
Files (24.5 kB)