PyBIDS: Python tools for BIDS datasets (original) (raw)

Published October 16, 2025 | Version 0.21.0

Software Open

Authors/Creators

• Yarkoni, Tal1

• Markiewicz, Christopher J.2

• de la Vega, Alejandro1

• Gorgolewski, Krzysztof J.3

• Salo, Taylor4

• Gau, Remi5

• Halchenko, Yaroslav O.6

• Papadopoulos Orfanos, Dimitri7

• Esteban, Oscar3

• McNamara, Quinten1

• Kent, James D.1

• DeStasio, Krista8

• Poline, Jean-Baptiste9

• Johnson, Hans10

• Kalenkovich, Evgenii

• Petrov, Dmitry11

• Nielson, Dylan M.12

• Goncalves, Mathias3

• Appelhoff, Stefan13

• Van Dyken, Peter14

• Bansal, Shashank2

• Hayot-Sasson, Valérie15

• Carlin, Johan16

• Kiar, Gregory17

• Whitaker, Kirstie18

• Ghosh, Satrajit19

• Wagner, Adina20

• DuPre, Elizabeth17

• Khan, Ali

• Janke, Andrew

• Cook, Philip A4

• Ivanov, Alexander

• Gillman, Ashley21

• Wennberg, Johannes22

• Tirrell, Lee S.23

• Tilley II, Steven24

• Li, Adam25

• Erkent, Alp26

• Pinsard, Basile27

• Mumford, Jeanette2

• Legarreta, Jon Haitz28

• Waller, Lea29

• Jas, Mainak30

• Hanke, Michael31

• Guenther, Nick32

• Poldrack, Russell2

• Rokem, Ariel33

• Boulay, Chadwick34

• Thual, Alexis35

• Holdgraf, Chris36

• Staden, Isla37

• Staph, Jason A.

• Drew, William38

• Sinha, Ankur39

• Rovai, Antonin40

• Adebimpe, Azeez4

• Thirion, Bertrand41

• Shain, Cory2

• Kleinschmidt, Dave F.42

• Ferdman, Emmanuel

• Dickie, Erin W43

• Raimondo, Fede44

• Ben-Zvi, Gal45

• Lee, John A.46

• Kruper, John

• Visconti di Oleggio Castello, Matteo47

• Notter, Michael Philipp48

• Roca, Pauline49

• Blair, Ross2

• Pati, Sarthak4

• Sundaravadivelu, Suganya

• Asciutto, Will

• pierre-nedelec

• 1. University of Texas at Austin

• 2. Stanford University

• 3. Department of Psychology, Stanford University

• 4. University of Pennsylvania

• 5. Université catholique de Louvain

• 6. Dartmouth College

• 7. CEA

• 8. University of Oregon

• 9. McGill University

• 10. University of Iowa

• 11. Institute for Problems of Information Transmission

• 12. National Institute of Mental Health

• 13. Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany

• 14. Western University, London, ON, CA

• 15. Concordia University

• 16. MRC Cognition and Brain Sciences Unit

• 17. Montreal Neurological Institute and Hospital

• 18. Alan Turing Institute; Department of Psychiatry, University of Cambridge

• 19. MIT, HMS

• 20. Psychoinformatics Lab, Institute of Psychology, Otto-von-Guericke University Magdeburg

• 21. Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland

• 22. KTH Royal Institute of Technology

• 23. CorticoMetrics LLC

• 24. Holland Bloorview Kids Rehabilitation Hospital

• 25. Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA

• 26. Child Mind Institute

• 27. University of Montréal, Montréal, Canada

• 28. Université de Sherbrooke

• 29. Charite Universitatsmedizin Berlin, Germany

• 30. Télécom ParisTech, France

• 31. Otto-von-Guericke-University Magdeburg, Germany

• 32. Polytechnique Montréal

• 33. The University of Washington eScience Institute

• 34. Ottawa Hospital Research Institute

• 35. CEA, Inria

• 36. Berkeley Institute for Data Science; University of California at Berkeley

• 37. Queen Mary University London

• 38. Brigham and Women's Hospital

• 39. University College London

• 40. Université Libre de Bruxelles - Hôpital Erasme

• 41. INRIA

• 42. Rutgers University

• 43. Centre for Addiction and Mental Health, University of Toronto, Canada

• 44. Institute of Neuroscience and Medicine (INM-7: Brain and Behaviour), Forschungszentrum Jülich

• 45. Sagol School of Neuroscience, Tel Aviv University

• 46. NIMH IRP

• 47. UC Berkeley

• 48. The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland

• 49. Sainte-Anne Hospital Center, Université Paris Descartes

Description

PyBIDS is a Python library to centralize interactions with datasets conforming BIDS (Brain Imaging Data Structure) format. For more information about BIDS visit bids.neuroimaging.io.

Files

bids-standard/pybids-0.21.0.zip

Files (13.8 MB)

Additional details