The impact of protein characterization in structural proteomics (original) (raw)
References
Albeck, S. et al. (2006). Acta Cryst. D62, 1184–1195. Web of Science CrossRef CAS IUCr Journals Google Scholar
Alzari, P. M. et al. (2006). Acta Cryst. D62, 1103–1113. Web of Science CrossRef CAS IUCr Journals Google Scholar
Aricescu, A. R. et al. (2006). Acta Cryst. D62, 1114–112. Web of Science CrossRef CAS IUCr Journals Google Scholar
Au, K. et al. (2006). Acta Cryst. D62, 1267–1275. Web of Science CrossRef CAS IUCr Journals Google Scholar
Bakhtiar, R. & Tse, F. L. (2000). Mutagenesis, 15, 415–430. Web of Science CrossRef PubMed CAS Google Scholar
Banci, L. et al. (2006). Acta Cryst. D62, 1208–1217. Web of Science CrossRef CAS IUCr Journals Google Scholar
Brown, J., O'Callaghan, C. A., Marshall, A. S. J., Gilbert, R. J., Siebold, C., Gordon, S., Brown, G. D. & Jones, E. Y. (2006). Submitted. Google Scholar
Butters, T. D., Sparks, L. M., Harlos, K., Ikemizu, S., Stuart, D. I., Jones, E. Y. & Davis, S. J. (1999). Protein Sci. 8, 1696–1701. CrossRef PubMed CAS Google Scholar
Carver, T. E. et al. (2005). J. Biol. Chem. 280, 11704–11712. Web of Science CrossRef PubMed CAS Google Scholar
Cohen, S. L. & Chait, B. T. (2001). Annu. Rev. Biophys. Biomol. Struct. 30, 67–85. Web of Science CrossRef PubMed CAS Google Scholar
Collins, A. V., Brodie, D. W., Gilbert, R. J., Iaboni, A., Manso-Sancho, R., Walse, B., Stuart, D. I., van der Merwe, P. A. & Davis, S. J. (2002). Immunity, 17, 201–210. Web of Science CrossRef PubMed CAS Google Scholar
Collins, B. K., Tomanicek, S. J., Lyamicheva, N., Kaiser, M. W. & Mueser, T. C. (2004). Acta Cryst. D60, 1674–1678. Web of Science CrossRef CAS IUCr Journals Google Scholar
Constantine, K. L., Krystek, S. R., Healy, M. D., Doyle, M. L., Siemers, N. O., Thanassi, J., Yan, N., Xie, D., Goldfarb, V., Yanchunas, J., Tao, L., Dougherty, B. A. & Farmer, B. T. II (2005). Protein Sci. 14, 1472–1484. Web of Science CrossRef PubMed CAS Google Scholar
D'Arcy, A. (1994). Acta Cryst. D50, 469–471. CrossRef CAS Web of Science IUCr Journals Google Scholar
Egloff, M. P., Benarroch, D., Selisko, B., Romette, J. L. & Canard, B. (2002). EMBO J. 21, 2757–2768. Web of Science CrossRef PubMed CAS Google Scholar
El Omari, K., Bird, L. E., Nichols, C. E., Ren, J. & Stammers, D. K. (2005). J. Biol. Chem. 280, 18229–18236. Web of Science CrossRef PubMed CAS Google Scholar
Ericsson, U., Hallberg, M., DeTitta, G., Dekker, N. & Nordlund, P. (2006). Submitted. Google Scholar
Esnouf, R. M., Hamer, R., Sussman, J. L., Silman, I., Trudgian, D., Yang, Z.-R. & Prilusky, J. (2006). Acta Cryst. D62, 1260–1266. Web of Science CrossRef CAS IUCr Journals Google Scholar
Feigin, L. A. & Svergun, D. I. (1987). Structure Analysis by Small-Angle X-ray and Neutron Scattering. New York: Plenum Press. Google Scholar
Fenn, J. B., Mann, M., Meng, C. K., Wong, S. F. & Whitehouse, C. M. (1989). Science, 246, 64–71. CrossRef CAS PubMed Web of Science Google Scholar
Ferré-D'Amaré, A. R. & Burley, S. K. (1994). Structure, 2, 357–359. PubMed Web of Science Google Scholar
Ferré-D'Amaré, A. R. & Burley, S. K. (1997). Methods Enzymol. 276, 157–166. Google Scholar
Gahmberg, C. G. & Tolvanen, M. (1996). Trends Biochem. Sci. 21, 308–311. CrossRef CAS PubMed Google Scholar
Gervais, V., Lamour, V., Jawhari, A., Frindel, F., Wasielewski, E., Dubaele, S., Egly, J. M., Thierry, J. C., Kieffer, B. & Poterszman, A. (2004). Nature Struct. Mol. Biol. 11, 616–622. Web of Science CrossRef CAS Google Scholar
Grishaev, A., Wu, J., Trewhella, J. & Bax, A. (2005). J. Am. Chem. Soc. 127, 16621–16628. Web of Science CrossRef PubMed CAS Google Scholar
Harkiolaki, M., Lewitzky, M., Gilbert, R. J., Jones, E. Y., Bourette, R. P., Mouchiroud, G., Sondermann, H., Moarefi, I. & Feller, S. M. (2003). EMBO J. 22, 2571–2582. Web of Science CrossRef PubMed CAS Google Scholar
Heuvel, R. H. van den, Svergun, D. I., Petoukhov, M. V., Coda, A., Curti, B., Ravasio, S., Vanoni, M. A. & Mattevi, A. (2003). J. Mol. Biol. 330, 113–128. Web of Science CrossRef PubMed Google Scholar
Hillenkamp, F., Karas, M., Beavis, R. C. & Chait, B. T. (1991). Anal. Chem. 63, 1193A–1203A. CrossRef PubMed CAS Google Scholar
Ikemizu, S., Gilbert, R. J., Fennelly, J. A., Collins, A. V., Harlos, K., Jones, E. Y., Stuart, D. I. & Davis, S. J. (2000). Immunity, 12, 51–60. Web of Science CrossRef PubMed CAS Google Scholar
Jancarik, J., Pufan, R., Hong, C., Kim, S.-H. & Kim, R. (2004). Acta Cryst. D60, 1670–1673. Web of Science CrossRef CAS IUCr Journals Google Scholar
Jawhari, A., Boussert, S., Lamour, V., Atkinson, R. A., Kieffer, B., Poch, O., Potier, N., van Dorsselaer, A., Moras, D. & Poterszman, A. (2004). Biochemistry, 43, 14420–14430. Web of Science CrossRef PubMed CAS Google Scholar
Jeon, W. B., Aceti, D. J., Bingman, C. A., Vojtik, F. C., Olson, A. C., Ellefson, J. M., McCombs, J. E., Sreenath, H. K., Blommel, P. G., Seder, K. D., Burns, B. T., Geetha, H. V., Harms, A. C., Sabat, G., Sussman, M. R., Fox, B. G. & Phillips, G. N. Jr (2005). J. Struct. Funct. Genomics, 6, 143–147. CrossRef PubMed CAS Google Scholar
Koch, M. H. J., Vachette, P. & Svergun, D. I. (2003). Quart. Rev. Biophys. 36, 147–227. Web of Science CrossRef CAS Google Scholar
Konarev, P. V., Petoukhov, M. V. & Svergun, D. I. (2001). J. Appl. Cryst. 34, 527–532. Web of Science CrossRef CAS IUCr Journals Google Scholar
Kozielski, F., Svergun, D., Zaccai, G., Wade, R. H. & Koch, M. H. J. (2001). J. Biol. Chem. 276, 1267–1275. Web of Science CrossRef PubMed CAS Google Scholar
Laurila, M. R., Salgado, P. S., Makeyev, E. V., Nettleship, J., Stuart, D. I., Grimes, J. M. & Bamford, D. H. (2005). J. Struct. Biol. 149, 111–115. Web of Science CrossRef PubMed CAS Google Scholar
Lesley, S. A. (2001). Protein Expr. Purif. 22, 159–164. Web of Science CrossRef PubMed CAS Google Scholar
Lo, M. C., Aulabaugh, A., Jin, G., Cowling, R., Bard, J., Malamas, M. & Ellestad, G. (2004). Anal. Biochem. 332, 153–159. Web of Science CrossRef PubMed CAS Google Scholar
Marquez, J. A., Smith, C. I., Petoukhov, M. V., Lo Surdo, P., Mattsson, P. T., Knekt, M., Westlund, A., Scheffzek, K., Saraste, M. & Svergun, D. I. (2003). EMBO J. 22, 4616–4624. Web of Science CrossRef PubMed CAS Google Scholar
Mattinen, M. L., Paakkonen, K., Ikonen, T., Craven, J., Drakenberg, T., Serimaa, R., Waltho, J. & Annila, A. (2002). Biophys. J. 83, 1177–1183. Web of Science CrossRef PubMed CAS Google Scholar
Matulis, D., Kranz, J. K., Salemme, F. R. & Todd, M. J. (2005). Biochemistry, 44, 5258–5266. Web of Science CrossRef PubMed CAS Google Scholar
Mavaddat, N., Mason, D. W., Atkinson, P. D., Evans, E. J., Gilbert, R. J., Stuart, D. I., Fennelly, J. A., Barclay, A. N., Davis, S. J. & Brown, M. H. (2000). J. Biol. Chem. 275, 28100–28109. Web of Science PubMed CAS Google Scholar
Merry, A. H., Gilbert, R. J., Shore, D. A., Royle, L., Miroshnychenko, O., Vuong, M., Wormald, M. R., Harvey, D. J., Dwek, R. A., Classon, B. J., Rudd, P. M. & Davis, S. J. (2003). J. Biol. Chem. 278, 27119–27128. Web of Science CrossRef PubMed CAS Google Scholar
Morth, J. P., Feng, V., Perry, L. J., Svergun, D. I. & Tucker, P. A. (2004). Structure, 12, 1595–1605. Web of Science CrossRef PubMed CAS Google Scholar
Nettleship, J. E., Walter, T. S., Aplin, R., Stammers, D. K. & Owens, R. J. (2005). Acta Cryst. D61, 643–645. Web of Science CrossRef CAS IUCr Journals Google Scholar
Pantazatos, D., Kim, J. S., Klock, H. E., Stevens, R. C., Wilson, I. A., Lesley, S. A. & Woods, V. L. Jr (2004). Proc. Natl Acad. Sci. USA, 101, 751–756. Web of Science CrossRef PubMed CAS Google Scholar
Pantoliano, M. W., Petrella, E. C., Kwasnoski, J. D., Lobanov, V. S., Myslik, J., Graf, E., Carver, T., Asel, E., Springer, B. A., Lane, P. & Salemme, F. R. (2001). J. Biomol. Screen. 6, 429–440. Web of Science CrossRef PubMed CAS Google Scholar
Petoukhov, M. V., Eady, N. A., Brown, K. A. & Svergun, D. I. (2002). Biophys. J. 83, 3113–3125. Web of Science CrossRef PubMed CAS Google Scholar
Petoukhov, M. V. & Svergun, D. I. (2005). Biophys. J. 89, 1237–1250. Web of Science CrossRef PubMed CAS Google Scholar
Potier, N., Billas, I. M., Steinmetz, A., Schaeffer, C., van Dorsselaer, A., Moras, D. & Renaud, J. P. (2003). Protein Sci. 12, 725–733. Web of Science CrossRef PubMed CAS Google Scholar
Potier, N., Lamour, V., Poterszman, A., Thierry, J. C., Moras, D. & Van Dorsselaer, A. (2000). Acta Cryst. D56, 1583–1590. Web of Science CrossRef CAS IUCr Journals Google Scholar
Schuck, P. (2003). Anal. Biochem. 320, 104–124. Web of Science CrossRef PubMed CAS Google Scholar
Shapiro, L., Doyle, J. P., Hensley, P., Colman, D. R. & Hendrickson, W. A. (1996). Neuron, 17, 435–449. CrossRef CAS PubMed Web of Science Google Scholar
Siebold, C., Berrow, N., Walter, T. S., Harlos, K., Owens, R. J., Stuart, D. I., Terman, J. R., Kolodkin, A. L., Pasterkamp, R. J. & Jones, E. Y. (2005). Proc. Natl Acad. Sci. USA, 102, 16836–16841. Web of Science CrossRef PubMed CAS Google Scholar
Sokolova, A., Malfois, M., Caldentey, J., Svergun, D. I., Koch, M. H. J., Bamford, D. H. & Tuma, R. (2001). J. Biol. Chem. 276, 46187–46195. Web of Science CrossRef PubMed CAS Google Scholar
Solovyova, A. S., Nollmann, M., Mitchell, T. J. & Byron, O. (2004). Biophys. J. 87, 540–552. Web of Science CrossRef PubMed CAS Google Scholar
Stamper, C. C., Zhang, Y., Tobin, J. F., Erbe, D. V., Ikemizu, S., Davis, S. J., Stahl, M. L., Seehra, J., Somers, W. S. & Mosyak, L. (2001). Nature (London), 410, 608–611. Web of Science CrossRef PubMed CAS Google Scholar
Stehlin-Gaon, C., Willmann, D., Zeyer, D., Sanglier, S., Van Dorsselaer, A., Renaud, J. P., Moras, D. & Schule, R. (2003). Nature Struct. Biol. 10, 820–825. Web of Science CrossRef PubMed CAS Google Scholar
Stevens, R. C. (2000). Structure Fold. Des. 8, R177–R185. Web of Science CrossRef PubMed CAS Google Scholar
Sutton, G., Fry, E., Carter, L., Sainsbury, S., Walter, T., Nettleship, J., Berrow, N., Owens, R., Gilbert, R., Davidson, A., Siddell, S., Poon, L. L., Diprose, J., Alderton, D., Walsh, M., Grimes, J. M. & Stuart, D. I. (2004). Structure, 12, 341–353. CrossRef PubMed CAS Google Scholar
Svergun, D. I. (1999). Biophys. J. 76, 2879–2886. Web of Science CrossRef PubMed CAS Google Scholar
Svergun, D. I. & Koch, M. H. J. (2002). Curr. Opin. Struct. Biol. 12, 654–660. Web of Science CrossRef PubMed CAS Google Scholar
Svergun, D. I. & Koch, M. H. J. (2003). Rep. Prog. Phys. 66, 1735–1782. Web of Science CrossRef CAS Google Scholar
Svergun, D. I., Petoukhov, M. V. & Koch, M. H. J. (2001). Biophys. J. 80, 2946–2953. Web of Science CrossRef PubMed CAS Google Scholar
Svergun, D. I., Petoukhov, M. V., Koch, M. H. J. & Koenig, S. (2000). J. Biol. Chem. 275, 297–302. Web of Science CrossRef PubMed CAS Google Scholar
Trésaugues, L., Collinet, B., Minard, P., Henckes, G., Aufrere, R., Blondeau, K., Liger, D., Zhou, C. Z., Janin, J., Van Tilbeurgh, H. & Quevillon-Cheruel, S. (2004). J. Struct. Funct. Genomics, 5, 195–204. CrossRef PubMed CAS Google Scholar
Vachette, P., Koch, M. H. & Svergun, D. I. (2003). Methods Enzymol. 374, 584–615. Web of Science CrossRef PubMed CAS Google Scholar
Vincentelli, R., Canaan, S., Campanacci, V., Valencia, C., Maurin, D., Frassinetti, F., Scappucini-Calvo, L., Bourne, Y., Cambillau, C. & Bignon, C. (2004). Protein Sci. 13, 2782–2792. Web of Science CrossRef PubMed CAS Google Scholar
Wilson, W. W. (2003). J. Struct. Biol. 142, 56–65. Web of Science CrossRef PubMed Google Scholar
Yokoyama, S., Hirota, H., Kigawa, T., Yabuki, T., Shirouzu, M., Terada, T., Ito, Y., Matsuo, Y., Kuroda, Y., Nishimura, Y., Kyogoku, Y., Miki, K., Masui, R. & Kuramitsu, S. (2000). Nature Struct. Biol. 7, Suppl., 943–945. Google Scholar
© International Union of Crystallography. Prior permission is not required to reproduce short quotations, tables and figures from this article, provided the original authors and source are cited. For more information, click here.