The impact of protein characterization in structural proteomics (original) (raw)

References

First citationAlbeck, S. et al. (2006). Acta Cryst. D62, 1184–1195. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationAlzari, P. M. et al. (2006). Acta Cryst. D62, 1103–1113. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationAricescu, A. R. et al. (2006). Acta Cryst. D62, 1114–112. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationAu, K. et al. (2006). Acta Cryst. D62, 1267–1275. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBakhtiar, R. & Tse, F. L. (2000). Mutagenesis, 15, 415–430. Web of Science CrossRef PubMed CAS Google Scholar
First citationBanci, L. et al. (2006). Acta Cryst. D62, 1208–1217. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationBrown, J., O'Callaghan, C. A., Marshall, A. S. J., Gilbert, R. J., Siebold, C., Gordon, S., Brown, G. D. & Jones, E. Y. (2006). Submitted. Google Scholar
First citationButters, T. D., Sparks, L. M., Harlos, K., Ikemizu, S., Stuart, D. I., Jones, E. Y. & Davis, S. J. (1999). Protein Sci. 8, 1696–1701. CrossRef PubMed CAS Google Scholar
First citationCarver, T. E. et al. (2005). J. Biol. Chem. 280, 11704–11712. Web of Science CrossRef PubMed CAS Google Scholar
First citationCohen, S. L. & Chait, B. T. (2001). Annu. Rev. Biophys. Biomol. Struct. 30, 67–85. Web of Science CrossRef PubMed CAS Google Scholar
First citationCollins, A. V., Brodie, D. W., Gilbert, R. J., Iaboni, A., Manso-Sancho, R., Walse, B., Stuart, D. I., van der Merwe, P. A. & Davis, S. J. (2002). Immunity, 17, 201–210. Web of Science CrossRef PubMed CAS Google Scholar
First citationCollins, B. K., Tomanicek, S. J., Lyamicheva, N., Kaiser, M. W. & Mueser, T. C. (2004). Acta Cryst. D60, 1674–1678. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationConstantine, K. L., Krystek, S. R., Healy, M. D., Doyle, M. L., Siemers, N. O., Thanassi, J., Yan, N., Xie, D., Goldfarb, V., Yanchunas, J., Tao, L., Dougherty, B. A. & Farmer, B. T. II (2005). Protein Sci. 14, 1472–1484. Web of Science CrossRef PubMed CAS Google Scholar
First citationD'Arcy, A. (1994). Acta Cryst. D50, 469–471. CrossRef CAS Web of Science IUCr Journals Google Scholar
First citationEgloff, M. P., Benarroch, D., Selisko, B., Romette, J. L. & Canard, B. (2002). EMBO J. 21, 2757–2768. Web of Science CrossRef PubMed CAS Google Scholar
First citationEl Omari, K., Bird, L. E., Nichols, C. E., Ren, J. & Stammers, D. K. (2005). J. Biol. Chem. 280, 18229–18236. Web of Science CrossRef PubMed CAS Google Scholar
First citationEricsson, U., Hallberg, M., DeTitta, G., Dekker, N. & Nordlund, P. (2006). Submitted. Google Scholar
First citationEsnouf, R. M., Hamer, R., Sussman, J. L., Silman, I., Trudgian, D., Yang, Z.-R. & Prilusky, J. (2006). Acta Cryst. D62, 1260–1266. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationFeigin, L. A. & Svergun, D. I. (1987). Structure Analysis by Small-Angle X-ray and Neutron Scattering. New York: Plenum Press. Google Scholar
First citationFenn, J. B., Mann, M., Meng, C. K., Wong, S. F. & Whitehouse, C. M. (1989). Science, 246, 64–71. CrossRef CAS PubMed Web of Science Google Scholar
First citationFerré-D'Amaré, A. R. & Burley, S. K. (1994). Structure, 2, 357–359. PubMed Web of Science Google Scholar
First citationFerré-D'Amaré, A. R. & Burley, S. K. (1997). Methods Enzymol. 276, 157–166. Google Scholar
First citationGahmberg, C. G. & Tolvanen, M. (1996). Trends Biochem. Sci. 21, 308–311. CrossRef CAS PubMed Google Scholar
First citationGervais, V., Lamour, V., Jawhari, A., Frindel, F., Wasielewski, E., Dubaele, S., Egly, J. M., Thierry, J. C., Kieffer, B. & Poterszman, A. (2004). Nature Struct. Mol. Biol. 11, 616–622. Web of Science CrossRef CAS Google Scholar
First citationGrishaev, A., Wu, J., Trewhella, J. & Bax, A. (2005). J. Am. Chem. Soc. 127, 16621–16628. Web of Science CrossRef PubMed CAS Google Scholar
First citationHarkiolaki, M., Lewitzky, M., Gilbert, R. J., Jones, E. Y., Bourette, R. P., Mouchiroud, G., Sondermann, H., Moarefi, I. & Feller, S. M. (2003). EMBO J. 22, 2571–2582. Web of Science CrossRef PubMed CAS Google Scholar
First citationHeuvel, R. H. van den, Svergun, D. I., Petoukhov, M. V., Coda, A., Curti, B., Ravasio, S., Vanoni, M. A. & Mattevi, A. (2003). J. Mol. Biol. 330, 113–128. Web of Science CrossRef PubMed Google Scholar
First citationHillenkamp, F., Karas, M., Beavis, R. C. & Chait, B. T. (1991). Anal. Chem. 63, 1193A–1203A. CrossRef PubMed CAS Google Scholar
First citationIkemizu, S., Gilbert, R. J., Fennelly, J. A., Collins, A. V., Harlos, K., Jones, E. Y., Stuart, D. I. & Davis, S. J. (2000). Immunity, 12, 51–60. Web of Science CrossRef PubMed CAS Google Scholar
First citationJancarik, J., Pufan, R., Hong, C., Kim, S.-H. & Kim, R. (2004). Acta Cryst. D60, 1670–1673. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationJawhari, A., Boussert, S., Lamour, V., Atkinson, R. A., Kieffer, B., Poch, O., Potier, N., van Dorsselaer, A., Moras, D. & Poterszman, A. (2004). Biochemistry, 43, 14420–14430. Web of Science CrossRef PubMed CAS Google Scholar
First citationJeon, W. B., Aceti, D. J., Bingman, C. A., Vojtik, F. C., Olson, A. C., Ellefson, J. M., McCombs, J. E., Sreenath, H. K., Blommel, P. G., Seder, K. D., Burns, B. T., Geetha, H. V., Harms, A. C., Sabat, G., Sussman, M. R., Fox, B. G. & Phillips, G. N. Jr (2005). J. Struct. Funct. Genomics, 6, 143–147. CrossRef PubMed CAS Google Scholar
First citationKoch, M. H. J., Vachette, P. & Svergun, D. I. (2003). Quart. Rev. Biophys. 36, 147–227. Web of Science CrossRef CAS Google Scholar
First citationKonarev, P. V., Petoukhov, M. V. & Svergun, D. I. (2001). J. Appl. Cryst. 34, 527–532. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationKozielski, F., Svergun, D., Zaccai, G., Wade, R. H. & Koch, M. H. J. (2001). J. Biol. Chem. 276, 1267–1275. Web of Science CrossRef PubMed CAS Google Scholar
First citationLaurila, M. R., Salgado, P. S., Makeyev, E. V., Nettleship, J., Stuart, D. I., Grimes, J. M. & Bamford, D. H. (2005). J. Struct. Biol. 149, 111–­115. Web of Science CrossRef PubMed CAS Google Scholar
First citationLesley, S. A. (2001). Protein Expr. Purif. 22, 159–164. Web of Science CrossRef PubMed CAS Google Scholar
First citationLo, M. C., Aulabaugh, A., Jin, G., Cowling, R., Bard, J., Malamas, M. & Ellestad, G. (2004). Anal. Biochem. 332, 153–159. Web of Science CrossRef PubMed CAS Google Scholar
First citationMarquez, J. A., Smith, C. I., Petoukhov, M. V., Lo Surdo, P., Mattsson, P. T., Knekt, M., Westlund, A., Scheffzek, K., Saraste, M. & Svergun, D. I. (2003). EMBO J. 22, 4616–4624. Web of Science CrossRef PubMed CAS Google Scholar
First citationMattinen, M. L., Paakkonen, K., Ikonen, T., Craven, J., Drakenberg, T., Serimaa, R., Waltho, J. & Annila, A. (2002). Biophys. J. 83, 1177–1183. Web of Science CrossRef PubMed CAS Google Scholar
First citationMatulis, D., Kranz, J. K., Salemme, F. R. & Todd, M. J. (2005). Biochemistry, 44, 5258–5266. Web of Science CrossRef PubMed CAS Google Scholar
First citationMavaddat, N., Mason, D. W., Atkinson, P. D., Evans, E. J., Gilbert, R. J., Stuart, D. I., Fennelly, J. A., Barclay, A. N., Davis, S. J. & Brown, M. H. (2000). J. Biol. Chem. 275, 28100–28109. Web of Science PubMed CAS Google Scholar
First citationMerry, A. H., Gilbert, R. J., Shore, D. A., Royle, L., Miroshnychenko, O., Vuong, M., Wormald, M. R., Harvey, D. J., Dwek, R. A., Classon, B. J., Rudd, P. M. & Davis, S. J. (2003). J. Biol. Chem. 278, 27119–27128. Web of Science CrossRef PubMed CAS Google Scholar
First citationMorth, J. P., Feng, V., Perry, L. J., Svergun, D. I. & Tucker, P. A. (2004). Structure, 12, 1595–1605. Web of Science CrossRef PubMed CAS Google Scholar
First citationNettleship, J. E., Walter, T. S., Aplin, R., Stammers, D. K. & Owens, R. J. (2005). Acta Cryst. D61, 643–645. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationPantazatos, D., Kim, J. S., Klock, H. E., Stevens, R. C., Wilson, I. A., Lesley, S. A. & Woods, V. L. Jr (2004). Proc. Natl Acad. Sci. USA, 101, 751–756. Web of Science CrossRef PubMed CAS Google Scholar
First citationPantoliano, M. W., Petrella, E. C., Kwasnoski, J. D., Lobanov, V. S., Myslik, J., Graf, E., Carver, T., Asel, E., Springer, B. A., Lane, P. & Salemme, F. R. (2001). J. Biomol. Screen. 6, 429–440. Web of Science CrossRef PubMed CAS Google Scholar
First citationPetoukhov, M. V., Eady, N. A., Brown, K. A. & Svergun, D. I. (2002). Biophys. J. 83, 3113–3125. Web of Science CrossRef PubMed CAS Google Scholar
First citationPetoukhov, M. V. & Svergun, D. I. (2005). Biophys. J. 89, 1237–1250. Web of Science CrossRef PubMed CAS Google Scholar
First citationPotier, N., Billas, I. M., Steinmetz, A., Schaeffer, C., van Dorsselaer, A., Moras, D. & Renaud, J. P. (2003). Protein Sci. 12, 725–733. Web of Science CrossRef PubMed CAS Google Scholar
First citationPotier, N., Lamour, V., Poterszman, A., Thierry, J. C., Moras, D. & Van Dorsselaer, A. (2000). Acta Cryst. D56, 1583–1590. Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSchuck, P. (2003). Anal. Biochem. 320, 104–124. Web of Science CrossRef PubMed CAS Google Scholar
First citationShapiro, L., Doyle, J. P., Hensley, P., Colman, D. R. & Hendrickson, W. A. (1996). Neuron, 17, 435–449. CrossRef CAS PubMed Web of Science Google Scholar
First citationSiebold, C., Berrow, N., Walter, T. S., Harlos, K., Owens, R. J., Stuart, D. I., Terman, J. R., Kolodkin, A. L., Pasterkamp, R. J. & Jones, E. Y. (2005). Proc. Natl Acad. Sci. USA, 102, 16836–16841. Web of Science CrossRef PubMed CAS Google Scholar
First citationSokolova, A., Malfois, M., Caldentey, J., Svergun, D. I., Koch, M. H. J., Bamford, D. H. & Tuma, R. (2001). J. Biol. Chem. 276, 46187–46195. Web of Science CrossRef PubMed CAS Google Scholar
First citationSolovyova, A. S., Nollmann, M., Mitchell, T. J. & Byron, O. (2004). Biophys. J. 87, 540–552. Web of Science CrossRef PubMed CAS Google Scholar
First citationStamper, C. C., Zhang, Y., Tobin, J. F., Erbe, D. V., Ikemizu, S., Davis, S. J., Stahl, M. L., Seehra, J., Somers, W. S. & Mosyak, L. (2001). Nature (London), 410, 608–611. Web of Science CrossRef PubMed CAS Google Scholar
First citationStehlin-Gaon, C., Willmann, D., Zeyer, D., Sanglier, S., Van Dorsselaer, A., Renaud, J. P., Moras, D. & Schule, R. (2003). Nature Struct. Biol. 10, 820–825. Web of Science CrossRef PubMed CAS Google Scholar
First citationStevens, R. C. (2000). Structure Fold. Des. 8, R177–R185. Web of Science CrossRef PubMed CAS Google Scholar
First citationSutton, G., Fry, E., Carter, L., Sainsbury, S., Walter, T., Nettleship, J., Berrow, N., Owens, R., Gilbert, R., Davidson, A., Siddell, S., Poon, L. L., Diprose, J., Alderton, D., Walsh, M., Grimes, J. M. & Stuart, D. I. (2004). Structure, 12, 341–353. CrossRef PubMed CAS Google Scholar
First citationSvergun, D. I. (1999). Biophys. J. 76, 2879–2886. Web of Science CrossRef PubMed CAS Google Scholar
First citationSvergun, D. I. & Koch, M. H. J. (2002). Curr. Opin. Struct. Biol. 12, 654–660. Web of Science CrossRef PubMed CAS Google Scholar
First citationSvergun, D. I. & Koch, M. H. J. (2003). Rep. Prog. Phys. 66, 1735–1782. Web of Science CrossRef CAS Google Scholar
First citationSvergun, D. I., Petoukhov, M. V. & Koch, M. H. J. (2001). Biophys. J. 80, 2946–2953. Web of Science CrossRef PubMed CAS Google Scholar
First citationSvergun, D. I., Petoukhov, M. V., Koch, M. H. J. & Koenig, S. (2000). J. Biol. Chem. 275, 297–302. Web of Science CrossRef PubMed CAS Google Scholar
First citationTrésaugues, L., Collinet, B., Minard, P., Henckes, G., Aufrere, R., Blondeau, K., Liger, D., Zhou, C. Z., Janin, J., Van Tilbeurgh, H. & Quevillon-Cheruel, S. (2004). J. Struct. Funct. Genomics, 5, 195–­204. CrossRef PubMed CAS Google Scholar
First citationVachette, P., Koch, M. H. & Svergun, D. I. (2003). Methods Enzymol. 374, 584–615. Web of Science CrossRef PubMed CAS Google Scholar
First citationVincentelli, R., Canaan, S., Campanacci, V., Valencia, C., Maurin, D., Frassinetti, F., Scappucini-Calvo, L., Bourne, Y., Cambillau, C. & Bignon, C. (2004). Protein Sci. 13, 2782–2792. Web of Science CrossRef PubMed CAS Google Scholar
First citationWilson, W. W. (2003). J. Struct. Biol. 142, 56–65. Web of Science CrossRef PubMed Google Scholar
First citationYokoyama, S., Hirota, H., Kigawa, T., Yabuki, T., Shirouzu, M., Terada, T., Ito, Y., Matsuo, Y., Kuroda, Y., Nishimura, Y., Kyogoku, Y., Miki, K., Masui, R. & Kuramitsu, S. (2000). Nature Struct. Biol. 7, Suppl., 943–945. Google Scholar

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