EnteroBase (original) (raw)

Welcome to EnteroBase

Your advanced tool for exploring the genomic epidemiology of pathogens.
EnteroBase assembles, analyses, and interprets bacterial genomes to provide insights for researchers, epidemiologists, and healthcare professionals.

EnteroBase currently contains 1,771,614 bacterial strains

senterica Image Salmonella Total strains: 781,385 Assemblies in progress: 95 Schemes: rMLST, Achtman 7 Gene MLST, cgMLST V2 + HierCC V1, wgMLST

ecoli Image Escherichia/Shigella Total strains: 456,414 Assemblies in progress: 20 Schemes: rMLST, wgMLST, Achtman 7 Gene MLST, cgMLST V1 + HierCC V1

mycobacterium Image Logo Mycobacterium tuberculosis Total strains: 210,762 Schemes: cgMLST + HierCC, cgMLST V2 + HierCC

streptococcus Image Streptococcus Total strains: 174,269 Assemblies in progress: 14 Schemes: cgMLSTv1

enterococcus Image Logo Enterococcus Total strains: 54,652 Schemes: cgMLST E.faecalis + HierCC, cgMLST-ENT2 + HierCC, cgMLST E.faecium + HierCC

clostridium Image Clostridioides Total strains: 39,019 Assemblies in progress: 0 Schemes: wgMLST, rMLST, cgMLST V1 + HierCC V1

vibrio Image Vibrio Total strains: 26,481 Assemblies in progress: 0 Schemes: rMLST, Vibrio cgMLST + HierCC

yersinia Image Yersinia Total strains: 13,073 Assemblies in progress: 1 Schemes: rMLST, wgMLST, Achtman 7 Gene, McNally 7 Gene, cgMLST V1 + HierCC V1

helicobacter Image Helicobacter Total strains: 12,565 Assemblies in progress: 0 Schemes: rMLST

mcatarrhalis Image Moraxella Total strains: 2,994 Assemblies in progress: 0 Schemes: rMLST, Achtman 7 Gene