P. Tafforeau - Profile on Academia.edu (original) (raw)
Papers by P. Tafforeau
Proceedings of the National Academy of Sciences, 2006
Anthracotheriidae ͉ Chad ͉ Libya ͉ paleobiogeography ͉ early hominids
Correction of Ring Artefacts in X-ray Tomographs
Three-Dimensional Synchrotron Virtual Paleohistology: A New Insight into the World of Fossil Bone Microstructures Sophie Sanchez, Per E Ahlberg, Katherine M Trinajstic, Alessandro Mirone, Paul Tafforeau
Microscopy and Microanalysis, 2012
The recent developments of phase-contrast synchrotron imaging techniques have been of great i... more The recent developments of phase-contrast synchrotron imaging techniques have been of great interest for paleontologists, providing three-dimensional (3D) tomographic images of anatomical structures, thereby leading to new paleobiological insights and the discovery of new species. However, until now, it has not been used on features smaller than 5–7 μm voxel size in fossil bones. Because much information is contained within the 3D histological architecture of bone, including an ontogenetic record, crucial for understanding the paleobiology of fossil species, the application of phase-contrast synchrotron tomography to bone at higher resolutions is potentially of great interest. Here we use this technique to provide new 3D insights into the submicron-scale histology of fossil and recent bones, based on the development of new pink-beam configurations, data acquisition strategies, and improved processing tools. Not only do the scans reveal by nondestructive means all of the major features of the histology at a resolution comparable to that of optical microscopy, they provide 3D information that cannot be obtained by any other method.
The sequence of dental emergence in the Malayan colugo (Galeopterus variegatus) and its hearing on a potential synapomorphy of Euprimates
Enamel microstructure and molar development in Leptadapis magnus
An application of synchrotron based x-ray tomography in palaeontology: Investigating small, three-dimensional, exceptionally preserved fossil arthropods
The fossil record is biased towards biomineralised elements (for example bones, shells and teeth)... more The fossil record is biased towards biomineralised elements (for example bones, shells and teeth) that usually retain their original three-dimensional shape. Non-biomineralised arthropods, often comprising only exoskeletal tissues such as cuticle, are comparatively rare and are usually preserved in two-dimensions (including examples inside early diagenetic concretions). Rarer still are exceptionally preserved fossils that contain replicated soft tissues; although tissues that
Structures crâniennes du plus ancien vertébré à mâchoires (-410 millions d’années) révélé par tomographie synchrotron
Dupret, V., S. Sanchez, D. Goujet, P. Tafforeau, and P. Ahlberg. 2011: Structures crâniennes du p... more Dupret, V., S. Sanchez, D. Goujet, P. Tafforeau, and P. Ahlberg. 2011: Structures crâniennes du plus ancien vertébré à mâchoires (-410 millions d’années) révélé par tomographie synchrotron. 15ème Réunion des Chercheurs Francais en Suède, Tekniska Museet, Stockholm, 2011.
Dans la peau de Romundina stellina Ørvig, 1975 (Vertebrata, Placodermi, Acanthothoraci): Anatomie crânienne d'un des premiers gnathostomes révélée par tomographie synchrotron en contraste de phase - Being Romundina stellina Ørvig, 1975 (Vertebrate, Placodermi, Acanthothoraci): Intracranial anatom...
Submicron Imaging of Soft-Tissues Using Low-Dose Phase-Contrast X-Ray Synchrotron Microtomography With an Iodine Contrast Agent
The Anatomical Record, 2014
ABSTRACT 3D visualization of forming organs and tissues in early embryos helps understanding thei... more ABSTRACT 3D visualization of forming organs and tissues in early embryos helps understanding their developmental dynamics. 3D reconstruction of an organ from an image stack requires: (1) a sufficient number of slices in order to obtain smooth contours, and (2) a satisfactory contrast that allows differentiating between tissue layers during segmentation. Based on these principles, satisfactory but very time-consuming techniques are available for manual segmentation and step-by-step 3D reconstructions of small embryonic structures using histology (Viriot et al., 1997, 2000). Usual micro-CT devices available in developmental biology units do not provide the sufficient resolution required to visualize the smaller developing structures at early embryonic stages, such as tooth germs at E11.5. Furthermore, the contrast obtained from soft-tissues is low if high doses of radiation—not supported by small samples—are not used. A recent study (Raj et al., 2014) has shown that synchrotron imaging with a sliver-based contrast agent provides images of embryonic soft-tissues with a resolution of 4–10 micrometers. Here we show that the combination of propagation phase contrast, rapid imaging, phase retrieval and iodine contrast agent allows soft-tissue imaging with a voxel size of 0.695 micrometers and a relatively low radiation dose. This method provides submicronic images where single cells can be individualized.
Hominin Dental Structure and Development Revealed Non-Destructively by Multi-Scale Synchrotron Imaging
Dental roots morphology and phylogeny of hominoids
The earliest fossil wood and its hydraulic properties documented in a 407 million year old plant from France
Fossils of early vertebrates and the evolution of the gnathostome face revealed by Synchrotron imaging
Fossil early vertebrates shed lights on the origin of the gnathostome face
Synchrotron imaging as a tool for the survey of amber inclusions
100-million-year flowers from France studied with propagation phase-contrast x-Ray microtomography
Enamel thickness and tooth development in a subadult Dryopithecus brancoi (Rudapithecus hungaricus) individual
Supplementary Materials for
Proceedings of the National Academy of Sciences, 2006
Anthracotheriidae ͉ Chad ͉ Libya ͉ paleobiogeography ͉ early hominids
Correction of Ring Artefacts in X-ray Tomographs
Three-Dimensional Synchrotron Virtual Paleohistology: A New Insight into the World of Fossil Bone Microstructures Sophie Sanchez, Per E Ahlberg, Katherine M Trinajstic, Alessandro Mirone, Paul Tafforeau
Microscopy and Microanalysis, 2012
The recent developments of phase-contrast synchrotron imaging techniques have been of great i... more The recent developments of phase-contrast synchrotron imaging techniques have been of great interest for paleontologists, providing three-dimensional (3D) tomographic images of anatomical structures, thereby leading to new paleobiological insights and the discovery of new species. However, until now, it has not been used on features smaller than 5–7 μm voxel size in fossil bones. Because much information is contained within the 3D histological architecture of bone, including an ontogenetic record, crucial for understanding the paleobiology of fossil species, the application of phase-contrast synchrotron tomography to bone at higher resolutions is potentially of great interest. Here we use this technique to provide new 3D insights into the submicron-scale histology of fossil and recent bones, based on the development of new pink-beam configurations, data acquisition strategies, and improved processing tools. Not only do the scans reveal by nondestructive means all of the major features of the histology at a resolution comparable to that of optical microscopy, they provide 3D information that cannot be obtained by any other method.
The sequence of dental emergence in the Malayan colugo (Galeopterus variegatus) and its hearing on a potential synapomorphy of Euprimates
Enamel microstructure and molar development in Leptadapis magnus
An application of synchrotron based x-ray tomography in palaeontology: Investigating small, three-dimensional, exceptionally preserved fossil arthropods
The fossil record is biased towards biomineralised elements (for example bones, shells and teeth)... more The fossil record is biased towards biomineralised elements (for example bones, shells and teeth) that usually retain their original three-dimensional shape. Non-biomineralised arthropods, often comprising only exoskeletal tissues such as cuticle, are comparatively rare and are usually preserved in two-dimensions (including examples inside early diagenetic concretions). Rarer still are exceptionally preserved fossils that contain replicated soft tissues; although tissues that
Structures crâniennes du plus ancien vertébré à mâchoires (-410 millions d’années) révélé par tomographie synchrotron
Dupret, V., S. Sanchez, D. Goujet, P. Tafforeau, and P. Ahlberg. 2011: Structures crâniennes du p... more Dupret, V., S. Sanchez, D. Goujet, P. Tafforeau, and P. Ahlberg. 2011: Structures crâniennes du plus ancien vertébré à mâchoires (-410 millions d’années) révélé par tomographie synchrotron. 15ème Réunion des Chercheurs Francais en Suède, Tekniska Museet, Stockholm, 2011.
Dans la peau de Romundina stellina Ørvig, 1975 (Vertebrata, Placodermi, Acanthothoraci): Anatomie crânienne d'un des premiers gnathostomes révélée par tomographie synchrotron en contraste de phase - Being Romundina stellina Ørvig, 1975 (Vertebrate, Placodermi, Acanthothoraci): Intracranial anatom...
Submicron Imaging of Soft-Tissues Using Low-Dose Phase-Contrast X-Ray Synchrotron Microtomography With an Iodine Contrast Agent
The Anatomical Record, 2014
ABSTRACT 3D visualization of forming organs and tissues in early embryos helps understanding thei... more ABSTRACT 3D visualization of forming organs and tissues in early embryos helps understanding their developmental dynamics. 3D reconstruction of an organ from an image stack requires: (1) a sufficient number of slices in order to obtain smooth contours, and (2) a satisfactory contrast that allows differentiating between tissue layers during segmentation. Based on these principles, satisfactory but very time-consuming techniques are available for manual segmentation and step-by-step 3D reconstructions of small embryonic structures using histology (Viriot et al., 1997, 2000). Usual micro-CT devices available in developmental biology units do not provide the sufficient resolution required to visualize the smaller developing structures at early embryonic stages, such as tooth germs at E11.5. Furthermore, the contrast obtained from soft-tissues is low if high doses of radiation—not supported by small samples—are not used. A recent study (Raj et al., 2014) has shown that synchrotron imaging with a sliver-based contrast agent provides images of embryonic soft-tissues with a resolution of 4–10 micrometers. Here we show that the combination of propagation phase contrast, rapid imaging, phase retrieval and iodine contrast agent allows soft-tissue imaging with a voxel size of 0.695 micrometers and a relatively low radiation dose. This method provides submicronic images where single cells can be individualized.
Hominin Dental Structure and Development Revealed Non-Destructively by Multi-Scale Synchrotron Imaging
Dental roots morphology and phylogeny of hominoids
The earliest fossil wood and its hydraulic properties documented in a 407 million year old plant from France
Fossils of early vertebrates and the evolution of the gnathostome face revealed by Synchrotron imaging
Fossil early vertebrates shed lights on the origin of the gnathostome face
Synchrotron imaging as a tool for the survey of amber inclusions
100-million-year flowers from France studied with propagation phase-contrast x-Ray microtomography
Enamel thickness and tooth development in a subadult Dryopithecus brancoi (Rudapithecus hungaricus) individual
Supplementary Materials for