Masum Akond, Ph.D. | University of Florida (original) (raw)
Papers by Masum Akond, Ph.D.
Soybean is one of the most important crops worldwide for its protein and oil as well as the healt... more Soybean is one of the most important crops worldwide for its protein and oil as well as the health beneficial phytoestrogens or isoflavone. This study reports a relatively dense single nucleotide polymorphism (SNP)-based genetic map based on 'Hamilton' by 'Spencer' recombinant inbred line population and quantitative trait loci (QTL) for seed isoflavone contents. The genetic map is composed of 1502 SNP markers and covers about 1423.72 cM of the soybean genome. Two QTL for seed isoflavone contents have been identified in this population. One major QTL that controlled both daidzein (qDZ1) and total isoflavone contents (qTI1) was found on LG C2 (Chr 6). And a second QTL for glycitein content (qGT1) was identified on the LG G (Chr 18). These two QTL in addition to others identified in soybean could be used in soybean breeding to optimize isoflavone content. This newly assembled soybean linkage map is a useful tool to identify and map QTL for important agronomic traits and enhance the identification of the genes involved in these traits.
The best way to protect yield loss of soybean [Glycine max (L.) Merr.] due to sudden death syndro... more The best way to protect yield loss of soybean [Glycine max (L.) Merr.] due to sudden death syndrome (SDS), caused by Fusarium virguliforme (Aoki, O'Donnel, Homma & Lattanzi), is the development and use of resistant lines. Mapping quantitative trait loci (QTL) linked to SDS help developing resistant soybean germplasm through molecular marker-assisted selection strategy. QTL for SDS presented herein are from a high-density SNP-based genetic linkage map of MD 96-5722 (a.k.a 'Monocacy') by 'Spencer' recombinant inbred line using SoySNP6K Illumina Infinium BeadChip genotyping array. Ninety-four F 5:7 lines were evaluated for 2 years (2010 and 2011) at two locations (Carbondale and Valmeyer) in southern Illinois, USA to identify QTL controlling SDS resistance using disease index (DX). Composite interval mapping identified 19 SDS controlling QTL which were mapped on 11 separate linkage group (LG) or chromosomes (Chr) out of 20 LG or Chr of soybean genome. Many of these significant QTL identified in one environment/year were confirmed in another year or environment, which suggests a common genetic effects and modes of the pathogen. These new QTL are useful sources for SDS resistance studies in soybean breeding, complementing previously reported loci.
Isoflavones from soybeans [Glycine max (L.) Merr.] have a significant impact on human health to r... more Isoflavones from soybeans [Glycine max (L.) Merr.] have a significant impact on human health to reduce the risk of several major diseases. Breeding soybean for high isoflavone content in the seed is possible through marker-assisted selection (MAS) which can be based on quantitative trait loci (QTL). The objective of this study was to identify QTL controlling isoflavone content in a set of 'MD96-5722' by 'Spencer' recombinant inbred line (RIL) populations of soybean. Wide variations were found for seed concentrations of daidzein, glycitein, genistein, and total isoflavones among the RIL populations. Three QTL were identified on three different linkage groups (LG) represented by three different chromosomes (Chr). One QTL that controlled daidzein content was identified on LG A1 (Chr 5), and two QTL that underlay glycitein content were identified on LG K (Chr 9) and LG B2 (Chr 14). Identified QTL could be functional in developing soybean with preferable isoflavone concentrations in the seeds through MAS.
, oil, palmitic, stearic, oleic, linoleic, and linolenic acids percentage in soybean seeds. The o... more , oil, palmitic, stearic, oleic, linoleic, and linolenic acids percentage in soybean seeds. The objective of this study was to identify Quantitative Trait Loci (QTL) controlling protein, oil, and fatty acids content in a set of F 5:8 RILs derived from a cross between lines, 'MD 96-5722' and 'Spencer' using 5376 Single Nucleotide Polymorphism (SNP) markers from the Illumina Infinium SoySNP6K BeadChip array. QTL analysis used WinQTL Cart 2.5 software for composite interval mapping (CIM). Identified, were; one protein content QTL on linkage group (LG-) B2 or chromosome (Chr_) 14; 11 QTL associated with oil content on six linkage groups LG-N (Chr_3), LG-A1 (Chr_5), LG-K (Chr_9), LG-F (Chr_13), LG-B2 (Chr_14), and LG-J (Chr_16); and sixteen QTL for five major fatty acids (palmitic, stearic, oleic, linoleic, and linolenic acids) on LG-N (Chr_3), LG-F (Chr_13), LG-B2 (Chr_14), LG-E (Chr_15), LG-J (Chr_16), and LG-G (Chr_18). The SNP markers closely linked to the QTL reported here will be useful for development of cultivars with altered oil and fatty acid compositions in soybean breeding programs.
In rose breeding, identification of the parents based on the morphological characteristics become... more In rose breeding, identification of the parents based on the morphological characteristics becomes sometimes very difficult, and the molecular techniques open new horizons for research and improvement in this crop. The present study based on the F 1 cross of the 9 hip-bearing parents which produced 22 hybrids. Morphological evaluation of parent and hybrids included various qualitative traits like leaf color, hairiness, margins etc. Significant variation was revealed among parents and hybrids based on all parameters investigated including differences in overall performance. Genetic diversity among parents and verification of hybrids was evaluated using 10 polymorphic microsatellites markers. Estimates of heterozygosity varied among SSR loci and overall values of observed heterozygosity were 0.887 and total gene diversity was 0.852. Genetic relationship was established among all 32 genotypes by UPGMA revealed that narrow genetic base was found among the genotypes. All of hybrid and parents also showed allele homology with each other, reflecting the involvement of at least one parent genetic background in the cross. Inheritance of parental alleles was used to confirm the heterozygous nature of hybrid progenies.
This study reports a high density genetic linkage map based on the 'Maryland 96-5722' by 'Spencer... more This study reports a high density genetic linkage map based on the 'Maryland 96-5722' by 'Spencer' recombinant inbred line (RIL) population of soybean [Glycine max (L.) Merr.] and constructed exclusively with single nucleotide polymorphism (SNP) markers. The Illumina Infinium SoySNP6K BeadChip genotyping array produced 5,376 SNPs in the mapping population, with a 96.75% success rate. Significant level of goodness-of-fit for each locus was tested based on the observed vs. expected ratio (1:1). Out of 5,376 markers, 1,465 SNPs fit the 1:1 segregation rate having ≤20% missing data plus heterozygosity among the RILs. Among this 1,456 just 657 were polymorphic between the parents DNAs tested. These 657 SNPs were mapped using the JoinMap 4.0 software and 550 SNPs were distributed on 16 linkage groups (LGs) among the 20 chromosomes of the soybean genome. The total map length was just 201.57 centiMorgans (cM) with an average marker density of 0.37 cM. This is one of the high density SNP-based genetic linkage maps of soybean that will be used by the scientific community to map quantitative trait loci (QTL) and identify candidate genes for important agronomic traits in soybean.
Seed isoflavone content of soybean (Glycine max L. Merr.) is a trait of moderate heritablity and ... more Seed isoflavone content of soybean (Glycine max L. Merr.) is a trait of moderate heritablity and an ideal target for marker selection. To date over 20 QTL have been identified underlying this trait among seven populations. The objectives of this study were to identify additional QTL and candidate genes controlling isoflavone content in a set of recombinant inbred line (RIL) populations of soybean grown in two different seasons. Variations of isoflavones namely daidzein, glycitein and genistein contents over two growing seasons and locations suggests that isoflavones are influenced by both genes and environments. Six QTL were identified on five different chromosomes (Chr) or linkage groups (LG) that controlled daidzein (Chr_2/LG-M; Chr_17a/LG-D2), glycitein (Chr_2/LG-D1b; Chr_8/LG-A2) and genistein (Chr_8/LG-A2; Chr_12/LG-H) respectively in the seeds grown in season 2010. Two QTL were identified for daidzein (Chr_6/LG-C2; Chr_13b/LG-F), two QTLs for glycitein (Chr_1/LG-D1a; Chr_17c/LG-D2) and five QTLs for genistein (Chr_3/ LG-N; Chr_8/LG-A2; Chr_9/LG-K; Chr_18/LG-G) in the seeds of the 2011 growing season. Genes located within QTL confidence intervals were retrieved and gene ontology (GO) terms were used to identify those related to the flavonoid biosynthesis process. Twenty six candidate genes were identified that may be involved in isoflavones accumulation in soybean seeds.
Rose breeders need reliable and efficient germination protocols to exploit all viable embryos in ... more Rose breeders need reliable and efficient germination protocols to exploit all viable embryos in their breeding program. In this study, different treatment combinations were assessed to overcome the mechanical resistance of the pericarp and enhance germination of rose seeds obtained from hybridization among hybrids roses. Among the three treatments, 30 days warm temperature followed by 60 days cold stratification and 30% sulphuric acid treatment for 10 minutes proved more effective in getting higher seed germination (18.54%) and seed vigor index (261.18) of the progenies, leading to less germination (18.20 days) and imbibition period (23.64) with respect to other three treatments including control. This treatment also helped in increased total length of progeny (14.1 cm) and number of leaves per progeny (6.44), whereas response of other growth parameters of progeny was variable to this treatment. Correlation (r) between 2 pericarp thickness and seed germination percentage, germination and imbibition periods proved highly significant (r = 0.347, P < .05).
The objectives of this study were to detect quantitative trait loci (QTL) for moisture, protein, ... more The objectives of this study were to detect quantitative trait loci (QTL) for moisture, protein, and oil content in soybean grown in two plant density environments. Soybean recombinant inbred lines (RIL), obtained from a cross between cultivars PI 438489B and Hamilton, were used. Thirty one linkage groups were obtained from high density genetic linkage maps constructed by 1,536 Universal Soy Linkage Panel 1.0 of single nucleotide polymorphisms (SNP) markers. For the lines cultivated in higher plant density (25 cm row space), ten QTLs were mapped in A2, B2, C2, D1a, M and O linkage groups for moisture, protein, and oil. Two QTLs for moisture, two QTLs for protein and six QTLs for oil explained 0.09, 15.36 and 3.54% of the phenotypic variation of moisture, protein, and oil respectively. For the lines cultivated in lower density (50 cm row space), three QTLs for each of moisture and protein were mapped in linkage groups A2, C1, D1b, L and O; QTLs for moisture and protein explained 0.96 and 10.63% of the phenotypic variation respectively. These QTL will facilitate the implementation of MAS for moisture, protein and oil content in soybean-breeding programs.
Scientia Horticulturae, Jan 1, 2012
Temperatures for storage of crapemyrtle (Lagerstroemia spp.) pollen over time were studied using ... more Temperatures for storage of crapemyrtle (Lagerstroemia spp.) pollen over time were studied using clones of two interspecific hybrids (L. 'Cheyenne' and L. 'Wichita') and five species (L. indica 'Catawba', L. subcostata (NA 40181), L. limii (SHL2004-1), L. speciosa (MIA 36606), and L. fauriei 'Kiowa'). Pollen samples were stored at room temperature (23 ± 1 • C), 4 • C, −20 • C and −80 • C. Germination of pollen samples was examined at 0, 7, 15, 45, 75, or 105 days of storage (DOS) and data were analyzed using linear models. Fresh (0 DOS) pollen of L. 'Cheyenne' showed the highest germination (80%). For all other clones, pollen germination at 0 DOS ranged from 44% (L. speciosa) to 77% (L. fauriei 'Kiowa'). Pollen of all clones lost their viability within 7 DOS at room temperature. Overall, this study indicated that Lagerstroemia pollen is best maintained over time when pollen is stored under refrigeration, with a storage temperature of −20 • C often being preferable to 4 • C. Lowering the storage temperature to −80 • C is generally unnecessary, but not deleterious to pollen germination. Storage of viable crapemyrtle pollen for no longer than 75-105 days is adequate for allowing breeders to efficiently execute hybridization of germplasm flowering at different times or in widely separated locations.
Scientia Horticulturae, Jan 1, 2012
and sharing with colleagues.
![Research paper thumbnail of Genetic Analysis of Yield Components in the PI 438489B by 'Hamilton'Recombinant Inbred Line (RIL) Population of Soybean [Glycine max (L.) Merr.]](https://attachments.academia-assets.com/29208818/thumbnails/1.jpg)
](Journal of Agricultural …, Jan 1, 2012
Yield is a multi-factorial trait determined by several genetic traits and highly correlated with ... more Yield is a multi-factorial trait determined by several genetic traits and highly correlated with important agronomic traits in many crops including soybean. [Glycine max (L.)]. Plant height, seed and pod numbers, and seed weight are all components of yield and polygenic in nature. The objective of this study was to identify quantitative trait loci (QTL) for days to germination, days to flowering, plant height, pod number, seed number, 100-seed weight, and total seed weight in soybean using the using the PI 438489B by 'Hamilton' recombinant inbred line (RIL) population (PIxH, n=50). A total of 18 QTL were found on 10 different chromosomes. Three QTL for days to germination (qDG001-qDG003) have been identified on chromosomes 5b, 6, and 13b. Two QTL (qDF001 and qDF002) have been identified on chromosomes 9 and 13b, respectively. On QTL for plant height (qPH001) have been identified on chromosome 6. Four QTL for pod number (qPN001-qPN004) had been identified on chromosomes 2, 6, and 8 (2 QTL), respectively. Two QTL for seed number (qSN001 and qSN002) have been identified on chromosomes 5b and 11b, respectively. Five QTL for 100-seed weight (qSW001 to qSW005) have been identified on chromosomes 5a, 6, 8, 9, and 11c, respectively. Two QTL for total seed weight (qTSW001 and qTSW002) have been identified on chromosomes 5b and 17c, respectively. The QTL identified here may be introduced in breeding programs to develop soybean cultivars with high yield potential.
American Journal of …, Jan 1, 2011
American Journal of …, Jan 1, 2011
JOURNAL OF …, Jan 1, 2006
Research Journal of …, Jan 1, 2010
Nine wheat varieties (Shatabdi, Showrav, Protiva, Ahgrani, Kanchan, Akbar, Barkat, Sonalika, Kher... more Nine wheat varieties (Shatabdi, Showrav, Protiva, Ahgrani, Kanchan, Akbar, Barkat, Sonalika, Kheri) from Bangladesh were analyzed for determination of total polyphenol (TP), polyphenoloxidase (PPO), antioxidant activities (AA) and color index (CI). The highest TP (1.316 mg /gm GAE) and AA (14.58%) determined in Shatabdi and PPO (0.295 U × ml × min) in Barkat. The lowest TP (1.280 mg -1 /gm GAE), PPO (0.145 U × ml × min) was determined in Akbar and the lowest AA (7.64%) was in -1
Scientia Horticulturae, Jan 1, 2010
Journal of applied genetics, Jan 1, 2007
Seventy-two Xinjiang Triticum and Triticum polonicum accessions were subjected to AFLP analyses t... more Seventy-two Xinjiang Triticum and Triticum polonicum accessions were subjected to AFLP analyses to discuss the origin of Triticum petropavlovskyi. A total of 91 putative loci were produced by four primer combinations. Among them 56 loci were polymorphic, which is equivalent to 61.53 % of the total number of putative loci. Genetic diversity among 11 T. petropavlovskyi accessions was narrow due to the lowest number (32) of polymorphic loci among the wheat species. Forty four polymorphic loci were found in T. aestivum and T. compactum, whereas the highest polymorphism was observed in T. polonicum. On the basis of the UPGMA clustering and PCO grouping and genetic similarity estimates from the AFLPs, we noted that T. petropavlovskyi was more closely related to the Chinese accessions of T. polonicum than to T. polonicum from other countries. Two accessions of T. aestivum were grouped with T. petropavlovskyi in the UPGMA clustering. Both of them were similar to T. petropavlovskyi in respect of spike structure, i.e. the presence of awn, glume awn and also the presence of leaf pubescence. Six loci, which were commonly absent in Chinese T. polonicum, were also absent in almost all of the T. petropavlovskyi accessions. Findings of this study reduced the probability of an independent allopolyploidization event in the origin of T. petropavlovskyi and indicated a greater degree of gene flow between T. aestivum and T. polonicum leading to T. petropavlovskyi. It is most likely that the P-gene of T. petropavlovskyi hexaploid wheat was introduced from T. polonicum to T. aestivum via a spontaneous introgression or breeding effort.
Genetic Resources and Crop …, Jan 1, 2008
Abstracts Genetic diversity of a set of introgression lines of Triticum aestivum L./T. polonicum ... more Abstracts Genetic diversity of a set of introgression lines of Triticum aestivum L./T. polonicum L. with long glume and T. petropavlovskyi Udacz. et Migusch. were analyzed by Amplified Fragments Length Polymorphism (AFLP). Small-scale bulk breeding method was applied throughout until F 6 generation to develop the introgression lines. Thirtyeight hexapolid F 7 plants with long glume phenotype and their parents were subjected to AFLP analysis by four primer combinations. A total of 47 polymorphic loci were detected between the parents, 15 of them were introgressed across the 38 lines. It was hypothesized that approximately 50% of A or B genomes associated polymorphic loci were introgressed. The variation of introgression lines was limited within the diversity between their parents, T. aestivum L. cv. Novosibirskaya 67 (N67) and T. polonicum L. cv. IC12196. N67 was closer to 38 introgression lines than that of IC12196. The UPGMA cluster and principal coordinate analysis (PCO) grouping showed 0.84 to 0.98 similarity values between N67 and the introgression lines. Eleven T. petropavlovskyi accessions were distinguished from introgression lines with UPGMA clusters and PCO groupings, and T. petropavlovskyi was located between the introgressions lines and IC12196. Several introgression lines resembled with T. petropavlovskyi for awning and glume length. The genetic variation among 38 introgression lines was much wider than that of T. petropavlovskyi. We concluded that T. petropavlovskyi was established by intensive selection of hybrid between T. aestivum/T. polonicum.
Journal of applied genetics, Jan 1, 2006
The quality of durum wheat (Triticum turgidum ssp. durum) is influenced by polyphenol oxidase (PP... more The quality of durum wheat (Triticum turgidum ssp. durum) is influenced by polyphenol oxidase (PPO) activity and its corresponding substrates. A saturated molecular-marker linkage map was constructed previously by using a set of recombinant inbred (RI) lines, derived from a cross between durum wheat cultivars Jennah Khetifa and Cham 1. Quantitative trait loci (QTL) for PPO activity in seeds were mapped in this population. PPO activity in seeds of the parents and 110 RI lines was measured spectrophotometrically. The PPO activity of Cham 1 was significantly lower than that of Jennah Khetifa. QTL analysis of these data indicated that most of PPO activity was associated with major loci on the long arm of chromosome 2A. The trait was found to be strongly associated with the SSR marker Xgwm312@2A. With this knowledge, marker-assisted selection can be used to select genotypes with lower PPO activity in durum wheat populations.
Soybean is one of the most important crops worldwide for its protein and oil as well as the healt... more Soybean is one of the most important crops worldwide for its protein and oil as well as the health beneficial phytoestrogens or isoflavone. This study reports a relatively dense single nucleotide polymorphism (SNP)-based genetic map based on 'Hamilton' by 'Spencer' recombinant inbred line population and quantitative trait loci (QTL) for seed isoflavone contents. The genetic map is composed of 1502 SNP markers and covers about 1423.72 cM of the soybean genome. Two QTL for seed isoflavone contents have been identified in this population. One major QTL that controlled both daidzein (qDZ1) and total isoflavone contents (qTI1) was found on LG C2 (Chr 6). And a second QTL for glycitein content (qGT1) was identified on the LG G (Chr 18). These two QTL in addition to others identified in soybean could be used in soybean breeding to optimize isoflavone content. This newly assembled soybean linkage map is a useful tool to identify and map QTL for important agronomic traits and enhance the identification of the genes involved in these traits.
The best way to protect yield loss of soybean [Glycine max (L.) Merr.] due to sudden death syndro... more The best way to protect yield loss of soybean [Glycine max (L.) Merr.] due to sudden death syndrome (SDS), caused by Fusarium virguliforme (Aoki, O'Donnel, Homma & Lattanzi), is the development and use of resistant lines. Mapping quantitative trait loci (QTL) linked to SDS help developing resistant soybean germplasm through molecular marker-assisted selection strategy. QTL for SDS presented herein are from a high-density SNP-based genetic linkage map of MD 96-5722 (a.k.a 'Monocacy') by 'Spencer' recombinant inbred line using SoySNP6K Illumina Infinium BeadChip genotyping array. Ninety-four F 5:7 lines were evaluated for 2 years (2010 and 2011) at two locations (Carbondale and Valmeyer) in southern Illinois, USA to identify QTL controlling SDS resistance using disease index (DX). Composite interval mapping identified 19 SDS controlling QTL which were mapped on 11 separate linkage group (LG) or chromosomes (Chr) out of 20 LG or Chr of soybean genome. Many of these significant QTL identified in one environment/year were confirmed in another year or environment, which suggests a common genetic effects and modes of the pathogen. These new QTL are useful sources for SDS resistance studies in soybean breeding, complementing previously reported loci.
Isoflavones from soybeans [Glycine max (L.) Merr.] have a significant impact on human health to r... more Isoflavones from soybeans [Glycine max (L.) Merr.] have a significant impact on human health to reduce the risk of several major diseases. Breeding soybean for high isoflavone content in the seed is possible through marker-assisted selection (MAS) which can be based on quantitative trait loci (QTL). The objective of this study was to identify QTL controlling isoflavone content in a set of 'MD96-5722' by 'Spencer' recombinant inbred line (RIL) populations of soybean. Wide variations were found for seed concentrations of daidzein, glycitein, genistein, and total isoflavones among the RIL populations. Three QTL were identified on three different linkage groups (LG) represented by three different chromosomes (Chr). One QTL that controlled daidzein content was identified on LG A1 (Chr 5), and two QTL that underlay glycitein content were identified on LG K (Chr 9) and LG B2 (Chr 14). Identified QTL could be functional in developing soybean with preferable isoflavone concentrations in the seeds through MAS.
, oil, palmitic, stearic, oleic, linoleic, and linolenic acids percentage in soybean seeds. The o... more , oil, palmitic, stearic, oleic, linoleic, and linolenic acids percentage in soybean seeds. The objective of this study was to identify Quantitative Trait Loci (QTL) controlling protein, oil, and fatty acids content in a set of F 5:8 RILs derived from a cross between lines, 'MD 96-5722' and 'Spencer' using 5376 Single Nucleotide Polymorphism (SNP) markers from the Illumina Infinium SoySNP6K BeadChip array. QTL analysis used WinQTL Cart 2.5 software for composite interval mapping (CIM). Identified, were; one protein content QTL on linkage group (LG-) B2 or chromosome (Chr_) 14; 11 QTL associated with oil content on six linkage groups LG-N (Chr_3), LG-A1 (Chr_5), LG-K (Chr_9), LG-F (Chr_13), LG-B2 (Chr_14), and LG-J (Chr_16); and sixteen QTL for five major fatty acids (palmitic, stearic, oleic, linoleic, and linolenic acids) on LG-N (Chr_3), LG-F (Chr_13), LG-B2 (Chr_14), LG-E (Chr_15), LG-J (Chr_16), and LG-G (Chr_18). The SNP markers closely linked to the QTL reported here will be useful for development of cultivars with altered oil and fatty acid compositions in soybean breeding programs.
In rose breeding, identification of the parents based on the morphological characteristics become... more In rose breeding, identification of the parents based on the morphological characteristics becomes sometimes very difficult, and the molecular techniques open new horizons for research and improvement in this crop. The present study based on the F 1 cross of the 9 hip-bearing parents which produced 22 hybrids. Morphological evaluation of parent and hybrids included various qualitative traits like leaf color, hairiness, margins etc. Significant variation was revealed among parents and hybrids based on all parameters investigated including differences in overall performance. Genetic diversity among parents and verification of hybrids was evaluated using 10 polymorphic microsatellites markers. Estimates of heterozygosity varied among SSR loci and overall values of observed heterozygosity were 0.887 and total gene diversity was 0.852. Genetic relationship was established among all 32 genotypes by UPGMA revealed that narrow genetic base was found among the genotypes. All of hybrid and parents also showed allele homology with each other, reflecting the involvement of at least one parent genetic background in the cross. Inheritance of parental alleles was used to confirm the heterozygous nature of hybrid progenies.
This study reports a high density genetic linkage map based on the 'Maryland 96-5722' by 'Spencer... more This study reports a high density genetic linkage map based on the 'Maryland 96-5722' by 'Spencer' recombinant inbred line (RIL) population of soybean [Glycine max (L.) Merr.] and constructed exclusively with single nucleotide polymorphism (SNP) markers. The Illumina Infinium SoySNP6K BeadChip genotyping array produced 5,376 SNPs in the mapping population, with a 96.75% success rate. Significant level of goodness-of-fit for each locus was tested based on the observed vs. expected ratio (1:1). Out of 5,376 markers, 1,465 SNPs fit the 1:1 segregation rate having ≤20% missing data plus heterozygosity among the RILs. Among this 1,456 just 657 were polymorphic between the parents DNAs tested. These 657 SNPs were mapped using the JoinMap 4.0 software and 550 SNPs were distributed on 16 linkage groups (LGs) among the 20 chromosomes of the soybean genome. The total map length was just 201.57 centiMorgans (cM) with an average marker density of 0.37 cM. This is one of the high density SNP-based genetic linkage maps of soybean that will be used by the scientific community to map quantitative trait loci (QTL) and identify candidate genes for important agronomic traits in soybean.
Seed isoflavone content of soybean (Glycine max L. Merr.) is a trait of moderate heritablity and ... more Seed isoflavone content of soybean (Glycine max L. Merr.) is a trait of moderate heritablity and an ideal target for marker selection. To date over 20 QTL have been identified underlying this trait among seven populations. The objectives of this study were to identify additional QTL and candidate genes controlling isoflavone content in a set of recombinant inbred line (RIL) populations of soybean grown in two different seasons. Variations of isoflavones namely daidzein, glycitein and genistein contents over two growing seasons and locations suggests that isoflavones are influenced by both genes and environments. Six QTL were identified on five different chromosomes (Chr) or linkage groups (LG) that controlled daidzein (Chr_2/LG-M; Chr_17a/LG-D2), glycitein (Chr_2/LG-D1b; Chr_8/LG-A2) and genistein (Chr_8/LG-A2; Chr_12/LG-H) respectively in the seeds grown in season 2010. Two QTL were identified for daidzein (Chr_6/LG-C2; Chr_13b/LG-F), two QTLs for glycitein (Chr_1/LG-D1a; Chr_17c/LG-D2) and five QTLs for genistein (Chr_3/ LG-N; Chr_8/LG-A2; Chr_9/LG-K; Chr_18/LG-G) in the seeds of the 2011 growing season. Genes located within QTL confidence intervals were retrieved and gene ontology (GO) terms were used to identify those related to the flavonoid biosynthesis process. Twenty six candidate genes were identified that may be involved in isoflavones accumulation in soybean seeds.
Rose breeders need reliable and efficient germination protocols to exploit all viable embryos in ... more Rose breeders need reliable and efficient germination protocols to exploit all viable embryos in their breeding program. In this study, different treatment combinations were assessed to overcome the mechanical resistance of the pericarp and enhance germination of rose seeds obtained from hybridization among hybrids roses. Among the three treatments, 30 days warm temperature followed by 60 days cold stratification and 30% sulphuric acid treatment for 10 minutes proved more effective in getting higher seed germination (18.54%) and seed vigor index (261.18) of the progenies, leading to less germination (18.20 days) and imbibition period (23.64) with respect to other three treatments including control. This treatment also helped in increased total length of progeny (14.1 cm) and number of leaves per progeny (6.44), whereas response of other growth parameters of progeny was variable to this treatment. Correlation (r) between 2 pericarp thickness and seed germination percentage, germination and imbibition periods proved highly significant (r = 0.347, P < .05).
The objectives of this study were to detect quantitative trait loci (QTL) for moisture, protein, ... more The objectives of this study were to detect quantitative trait loci (QTL) for moisture, protein, and oil content in soybean grown in two plant density environments. Soybean recombinant inbred lines (RIL), obtained from a cross between cultivars PI 438489B and Hamilton, were used. Thirty one linkage groups were obtained from high density genetic linkage maps constructed by 1,536 Universal Soy Linkage Panel 1.0 of single nucleotide polymorphisms (SNP) markers. For the lines cultivated in higher plant density (25 cm row space), ten QTLs were mapped in A2, B2, C2, D1a, M and O linkage groups for moisture, protein, and oil. Two QTLs for moisture, two QTLs for protein and six QTLs for oil explained 0.09, 15.36 and 3.54% of the phenotypic variation of moisture, protein, and oil respectively. For the lines cultivated in lower density (50 cm row space), three QTLs for each of moisture and protein were mapped in linkage groups A2, C1, D1b, L and O; QTLs for moisture and protein explained 0.96 and 10.63% of the phenotypic variation respectively. These QTL will facilitate the implementation of MAS for moisture, protein and oil content in soybean-breeding programs.
Scientia Horticulturae, Jan 1, 2012
Temperatures for storage of crapemyrtle (Lagerstroemia spp.) pollen over time were studied using ... more Temperatures for storage of crapemyrtle (Lagerstroemia spp.) pollen over time were studied using clones of two interspecific hybrids (L. 'Cheyenne' and L. 'Wichita') and five species (L. indica 'Catawba', L. subcostata (NA 40181), L. limii (SHL2004-1), L. speciosa (MIA 36606), and L. fauriei 'Kiowa'). Pollen samples were stored at room temperature (23 ± 1 • C), 4 • C, −20 • C and −80 • C. Germination of pollen samples was examined at 0, 7, 15, 45, 75, or 105 days of storage (DOS) and data were analyzed using linear models. Fresh (0 DOS) pollen of L. 'Cheyenne' showed the highest germination (80%). For all other clones, pollen germination at 0 DOS ranged from 44% (L. speciosa) to 77% (L. fauriei 'Kiowa'). Pollen of all clones lost their viability within 7 DOS at room temperature. Overall, this study indicated that Lagerstroemia pollen is best maintained over time when pollen is stored under refrigeration, with a storage temperature of −20 • C often being preferable to 4 • C. Lowering the storage temperature to −80 • C is generally unnecessary, but not deleterious to pollen germination. Storage of viable crapemyrtle pollen for no longer than 75-105 days is adequate for allowing breeders to efficiently execute hybridization of germplasm flowering at different times or in widely separated locations.
Scientia Horticulturae, Jan 1, 2012
and sharing with colleagues.
Journal of Agricultural …, Jan 1, 2012
Yield is a multi-factorial trait determined by several genetic traits and highly correlated with ... more Yield is a multi-factorial trait determined by several genetic traits and highly correlated with important agronomic traits in many crops including soybean. [Glycine max (L.)]. Plant height, seed and pod numbers, and seed weight are all components of yield and polygenic in nature. The objective of this study was to identify quantitative trait loci (QTL) for days to germination, days to flowering, plant height, pod number, seed number, 100-seed weight, and total seed weight in soybean using the using the PI 438489B by 'Hamilton' recombinant inbred line (RIL) population (PIxH, n=50). A total of 18 QTL were found on 10 different chromosomes. Three QTL for days to germination (qDG001-qDG003) have been identified on chromosomes 5b, 6, and 13b. Two QTL (qDF001 and qDF002) have been identified on chromosomes 9 and 13b, respectively. On QTL for plant height (qPH001) have been identified on chromosome 6. Four QTL for pod number (qPN001-qPN004) had been identified on chromosomes 2, 6, and 8 (2 QTL), respectively. Two QTL for seed number (qSN001 and qSN002) have been identified on chromosomes 5b and 11b, respectively. Five QTL for 100-seed weight (qSW001 to qSW005) have been identified on chromosomes 5a, 6, 8, 9, and 11c, respectively. Two QTL for total seed weight (qTSW001 and qTSW002) have been identified on chromosomes 5b and 17c, respectively. The QTL identified here may be introduced in breeding programs to develop soybean cultivars with high yield potential.
American Journal of …, Jan 1, 2011
American Journal of …, Jan 1, 2011
JOURNAL OF …, Jan 1, 2006
Research Journal of …, Jan 1, 2010
Nine wheat varieties (Shatabdi, Showrav, Protiva, Ahgrani, Kanchan, Akbar, Barkat, Sonalika, Kher... more Nine wheat varieties (Shatabdi, Showrav, Protiva, Ahgrani, Kanchan, Akbar, Barkat, Sonalika, Kheri) from Bangladesh were analyzed for determination of total polyphenol (TP), polyphenoloxidase (PPO), antioxidant activities (AA) and color index (CI). The highest TP (1.316 mg /gm GAE) and AA (14.58%) determined in Shatabdi and PPO (0.295 U × ml × min) in Barkat. The lowest TP (1.280 mg -1 /gm GAE), PPO (0.145 U × ml × min) was determined in Akbar and the lowest AA (7.64%) was in -1
Scientia Horticulturae, Jan 1, 2010
Journal of applied genetics, Jan 1, 2007
Seventy-two Xinjiang Triticum and Triticum polonicum accessions were subjected to AFLP analyses t... more Seventy-two Xinjiang Triticum and Triticum polonicum accessions were subjected to AFLP analyses to discuss the origin of Triticum petropavlovskyi. A total of 91 putative loci were produced by four primer combinations. Among them 56 loci were polymorphic, which is equivalent to 61.53 % of the total number of putative loci. Genetic diversity among 11 T. petropavlovskyi accessions was narrow due to the lowest number (32) of polymorphic loci among the wheat species. Forty four polymorphic loci were found in T. aestivum and T. compactum, whereas the highest polymorphism was observed in T. polonicum. On the basis of the UPGMA clustering and PCO grouping and genetic similarity estimates from the AFLPs, we noted that T. petropavlovskyi was more closely related to the Chinese accessions of T. polonicum than to T. polonicum from other countries. Two accessions of T. aestivum were grouped with T. petropavlovskyi in the UPGMA clustering. Both of them were similar to T. petropavlovskyi in respect of spike structure, i.e. the presence of awn, glume awn and also the presence of leaf pubescence. Six loci, which were commonly absent in Chinese T. polonicum, were also absent in almost all of the T. petropavlovskyi accessions. Findings of this study reduced the probability of an independent allopolyploidization event in the origin of T. petropavlovskyi and indicated a greater degree of gene flow between T. aestivum and T. polonicum leading to T. petropavlovskyi. It is most likely that the P-gene of T. petropavlovskyi hexaploid wheat was introduced from T. polonicum to T. aestivum via a spontaneous introgression or breeding effort.
Genetic Resources and Crop …, Jan 1, 2008
Abstracts Genetic diversity of a set of introgression lines of Triticum aestivum L./T. polonicum ... more Abstracts Genetic diversity of a set of introgression lines of Triticum aestivum L./T. polonicum L. with long glume and T. petropavlovskyi Udacz. et Migusch. were analyzed by Amplified Fragments Length Polymorphism (AFLP). Small-scale bulk breeding method was applied throughout until F 6 generation to develop the introgression lines. Thirtyeight hexapolid F 7 plants with long glume phenotype and their parents were subjected to AFLP analysis by four primer combinations. A total of 47 polymorphic loci were detected between the parents, 15 of them were introgressed across the 38 lines. It was hypothesized that approximately 50% of A or B genomes associated polymorphic loci were introgressed. The variation of introgression lines was limited within the diversity between their parents, T. aestivum L. cv. Novosibirskaya 67 (N67) and T. polonicum L. cv. IC12196. N67 was closer to 38 introgression lines than that of IC12196. The UPGMA cluster and principal coordinate analysis (PCO) grouping showed 0.84 to 0.98 similarity values between N67 and the introgression lines. Eleven T. petropavlovskyi accessions were distinguished from introgression lines with UPGMA clusters and PCO groupings, and T. petropavlovskyi was located between the introgressions lines and IC12196. Several introgression lines resembled with T. petropavlovskyi for awning and glume length. The genetic variation among 38 introgression lines was much wider than that of T. petropavlovskyi. We concluded that T. petropavlovskyi was established by intensive selection of hybrid between T. aestivum/T. polonicum.
Journal of applied genetics, Jan 1, 2006
The quality of durum wheat (Triticum turgidum ssp. durum) is influenced by polyphenol oxidase (PP... more The quality of durum wheat (Triticum turgidum ssp. durum) is influenced by polyphenol oxidase (PPO) activity and its corresponding substrates. A saturated molecular-marker linkage map was constructed previously by using a set of recombinant inbred (RI) lines, derived from a cross between durum wheat cultivars Jennah Khetifa and Cham 1. Quantitative trait loci (QTL) for PPO activity in seeds were mapped in this population. PPO activity in seeds of the parents and 110 RI lines was measured spectrophotometrically. The PPO activity of Cham 1 was significantly lower than that of Jennah Khetifa. QTL analysis of these data indicated that most of PPO activity was associated with major loci on the long arm of chromosome 2A. The trait was found to be strongly associated with the SSR marker Xgwm312@2A. With this knowledge, marker-assisted selection can be used to select genotypes with lower PPO activity in durum wheat populations.