FertigLab (original) (raw)
Software projects in computational biology and bioinformatics in Elana Fertig's lab in Oncology Biostatistics and Bioinformatics at JHMI
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- Bayesian MCMC matrix factorization algorithm
C++ 70 16 - python API to the CoGAPS NMF package
Python 19 6 - An R package for running cell-based models
C++ 8 1 - Head and neck cancer rna velocity scripts
Jupyter Notebook 7 2
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Showing 10 of 82 repositories
- FertigLab/spatial-test’s past year of commit activity
Python 0 0
0 0
Updated Dec 12, 2025 - FertigLab/fertiglab.github.io’s past year of commit activity
SCSS 0
1 1 0
Updated Oct 19, 2025 - CoGAPS Public
Bayesian MCMC matrix factorization algorithm
FertigLab/CoGAPS’s past year of commit activity
C++
70
BSD-3-Clause
16 25 1
Updated Sep 19, 2025 - FertigLab/dpt-combined-analysis’s past year of commit activity
Jupyter Notebook 0 0
0 0
Updated Sep 11, 2025 - FertigLab/Spatial_Venous_Invasion_PDAC’s past year of commit activity
HTML 0 GPL-3.0 0
0 0
Updated Aug 19, 2025 - FertigLab/Differential_Cell_Signaling_Test’s past year of commit activity
R 0 GPL-3.0 0
0 0
Updated Jul 7, 2025 - FertigLab/btc-spatial-pipelines’s past year of commit activity
Nextflow 0 MIT
1 0 0
Updated Jun 30, 2025 - pycogaps Public
python API to the CoGAPS NMF package
FertigLab/pycogaps’s past year of commit activity - Homolig Public
Homolig is a series of tools designed to compare the physiotypic properties of TCR and BCRs. Created by Alexander Girgis, Emily Davis-Marcisak, and Theron Palmer.
FertigLab/Homolig’s past year of commit activity
C++ 0 AGPL-3.0
1 1 1
Updated May 12, 2025 - FertigLab/Human_PanIN_Spatial_Analysis’s past year of commit activity
R 0 GPL-3.0 0
0 0
Updated May 7, 2025
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