FertigLab (original) (raw)

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Software projects in computational biology and bioinformatics in Elana Fertig's lab in Oncology Biostatistics and Bioinformatics at JHMI

• 32 followers

• ejfertig@jhmi.edu

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1. Bayesian MCMC matrix factorization algorithm
   C++ 69 17
2. python API to the CoGAPS NMF package
   Python 19 6
3. An R package for running cell-based models
   C++ 8 1
4. Head and neck cancer rna velocity scripts
   Jupyter Notebook 7 2
5. Repository for R code for single cell sequencing analysis published in Yarchoan, M., Gane, E.J., Marron, T.U. et al. Personalized neoantigen vaccine and pembrolizumab in advanced hepatocellular car…
   R 7 1

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Showing 10 of 78 repositories

• CoGAPS Public
  Bayesian MCMC matrix factorization algorithm
  FertigLab/CoGAPS’s past year of commit activity
  C++
  69
  BSD-3-Clause
  17 23 1
  Updated May 20, 2025
• pycogaps Public
  python API to the CoGAPS NMF package
  FertigLab/pycogaps’s past year of commit activity
• Homolig Public
  Homolig is a series of tools designed to compare the physiotypic properties of TCR and BCRs. Created by Alexander Girgis, Emily Davis-Marcisak, and Theron Palmer.
  FertigLab/Homolig’s past year of commit activity
  C++ 0 AGPL-3.0
  1 1 1
  Updated May 12, 2025
• FertigLab/dpt-combined-analysis’s past year of commit activity
  Jupyter Notebook 0 0
  0 0
  Updated May 8, 2025
• FertigLab/Human_PanIN_Spatial_Analysis’s past year of commit activity
  R 0 GPL-3.0 0
  0 0
  Updated May 7, 2025
• FertigLab/J1798_trial_paper’s past year of commit activity
  HTML 0 MIT 0
  0 0
  Updated Mar 19, 2025
• FertigLab/J15221_trial_paper’s past year of commit activity
  HTML 0 0
  0 0
  Updated Mar 19, 2025
• FertigLab/dpt-visium-notebook’s past year of commit activity
  Nextflow 0 0
  0 0
  Updated Mar 10, 2025
• FertigLab/onboarding’s past year of commit activity
  Ruby 0 MIT 0
  0 0
  Updated Feb 10, 2025
• dominoSignal Public Forked fromElisseeff-Lab/domino
  A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity.
  FertigLab/dominoSignal’s past year of commit activity

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