pbipa (original) (raw)

v1.3.0
- purge_dups by default (unless "--no-purge-dups")
- purge_dups on paf from pancake runs in parallel
- Include "ipa_purge_dups"
- "config_purge_map_opt"
v1.2.0
- Use htslib=1.10; stop pinning in Bioconda
- Add "-e" to get_seqs in purge-dups
v1.1.2
- Retain elements with high copy numbers, and down-sample them.
- Important bug-fix in nighthawk for some genomes (including HG).
- Run purge_dups stage (no-op by default, hidden option).
- Several other bug-fixes.
- Known bug: If nighthawk hangs, simply kill the job and restart snakemake.
v1.0.5
- Use finer-grained sharding for phasing, polishing, and overlapping.
- Other minor fixes.
v1.0.4
- Minor change to ipa dist defaults.
v1.0.3
- Minor fix
v0.0.2
- Bug fixes
v0.0.1
- Initial release