GitHub - SchlossLab/clustur: Cluster algorithms from mothur in R (original) (raw)

Overview

clustur was developed for two main reasons: to allow developers to easily create pipelines with mothur code in R, and to give users a powerful clustering algorithm from mothur without having to download it. Because clustur is built using rcpp, it benefits from the speed of C++ and the usability of R. Additionally, since clustur will be open source, developers can modify are package as needed. This will not only help us continue to create high quality packages, but will allow everyone to take advantage of the foundation that is already built.

Installation

For the official release from CRAN you can use the standardinstall.packages() function:

install via cran

install.packages("clustur") library(clustur)

For the developmental version, you can use the install_github()function from the {devtools} package

install via github

devtools::install_github("SchlossLab/clustur") library(clustur)

Getting Started

To get started, look at the “Get started”page.

Contributions

For feature request please visit the issue page in GitHub and use the feature tag. If you would like to contribute pull request are welcomed!