GitHub - TransBioInfoLab/rnaEditr (original) (raw)

rnaEditr: an R package for RNA-seq data analysis

Description

rnaEditr is an R package that identifies genomic sites and genomic regions that are differentially edited in RNA-seq datasets. rnaEditr can analyze studies with continuous, binary, or survival phenotypes, along with multiple covariates and/or interaction effects. To identify hyper-edited regions,rnaEditr first determines co-edited sub-regions without using any phenotype information. Next, rnaEditr tests association between RNA editing levels within the co-edited regions with binary, continuous or survival phenotypes.

Installation

The latest version can be installed by

if(!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("rnaEditr")

After installation, the rnaEditr package can be loaded into R using: