GitHub - YuLab-SMU/MicrobiomeProfiler: :microbe: A shiny package for microbiome functional enrichment analysis (original) (raw)

MicrobiomeProfiler is an R-shiny package based on clusterProfiler, is user-friendly tool for functional enrichment analysis in microbiome data (T Wu, et al., 2021).

if (!require("BiocManager"))
    install.packages("BiocManager")
BiocManager::install("MicrobiomeProfiler")

## Note that having installed clusterProfiler,config,DT,enrichplot,golem,magrittr,shiny,shinyWidgets,shinycustomloader,htmltools,ggplot2
if (!requireNamespace("devtools", quietly=TRUE))
    install.packages("devtools")
devtools::install_github("YuLab-SMU/MicrobiomeProfiler")

library(MicrobiomeProfiler)
run_MicrobiomeProfiler()