agudys - Overview (original) (raw)

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Adam Gudyś agudys

• Silesian University of Technology
• Gliwice, Poland

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1. Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
   C++ 216 30
2. Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
   C++ 96 18
3. Comprehensive suite for rule-based learning
   Java 189 12
4. A versatile compressor of third generation sequencing reads.
   C++ 52 14
5. Phage-Host Interaction Search Tool
   C++ 29 3
6. Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
   Python 95 4