GitHub - andersonbrito/paper_2022_metasurveillance (original) (raw)

Global disparities in SARS-CoV-2 genomic surveillance

Supplementary files from the study by Brito, A. F., et al. "Global disparities in SARS-CoV-2 genomic surveillance." Nature Communications (2022) .

Files

• raw_data/matrix_cases_unit.tsv = Matrix of weekly COVID-19 case counts per country.
• raw_data/matrix_genomes_unit.tsv = Matrix of weekly genomes counts per country.
• raw_data/weekly_sampling_proportions.tsv = Weekly proportions of sequenced cases per country.
• raw_data/matrix_incidence_week.tsv = Matrix of weekly incidence (cases per 100,000 habitants) per country
• raw_data/percseq_frequency.tsv = Table with percentage of sequenced cases and sampling frequency (proportion of weeks with at least one genome) per country.
• raw_data/genomes_submission_delays.tsv = list of turnaround times (in days), per submitted genome, per month.
• raw_data/UN_country_population_2020.tsv = Population per country, according to UN statistics.
• raw_data/income_classification_worldbank.tsv = Income class per country, as defined by the World Bank.