GitHub - edgararuiz/dbplot: Simplifies plotting of database and sparklyr data (original) (raw)

dbplot

• Installation
• Connecting to a data source
• Example
• ggplot
  • Histogram
  • Raster
  • Bar Plot
  • Line plot
  • Boxplot
• Calculation functions
• db_bin()

Leverages dplyr to process the calculations of a plot inside a database. This package provides helper functions that abstract the work at three levels:

1. Functions that ouput a ggplot2 object
2. Functions that outputs a data.frame object with the calculations
3. Creates the formula needed to calculate bins for a Histogram or a Raster plot

Installation

You can install the released version from CRAN:

install.packages("dbplot")

Or the the development version from GitHub, using the remotes package:

install.packages("remotes")

remotes::install_github("edgararuiz/dbplot")

Connecting to a data source

• For more information on how to connect to databases, including Hive, please visit http://db.rstudio.com
• To use Spark, please visit the sparklyr official website:http://spark.rstudio.com

Example

In addition to database connections, the functions work with sparklyr. A local RSQLite database will be used for the examples in this README.

library(DBI) library(odbc) library(dplyr)

con <- dbConnect(RSQLite::SQLite(), ":memory:") db_flights <- copy_to(con, nycflights13::flights, "flights")

ggplot

Histogram

By default dbplot_histogram() creates a 30 bin histogram

library(ggplot2)

db_flights %>% dbplot_histogram(distance)

Use binwidth to fix the bin size

db_flights %>% dbplot_histogram(distance, binwidth = 400)

Because it outputs a ggplot2 object, more customization can be done

db_flights %>% dbplot_histogram(distance, binwidth = 400) + labs(title = "Flights - Distance traveled") + theme_bw()

Raster

To visualize two continuous variables, we typically resort to a Scatter plot. However, this may not be practical when visualizing millions or billions of dots representing the intersections of the two variables. A Raster plot may be a better option, because it concentrates the intersections into squares that are easier to parse visually.

A Raster plot basically does the same as a Histogram. It takes two continuous variables and creates discrete 2-dimensional bins represented as squares in the plot. It then determines either the number of rows inside each square or processes some aggregation, like an average.

• If no fill argument is passed, the default calculation will be count, n()

db_flights %>% dbplot_raster(sched_dep_time, sched_arr_time)

• Pass an aggregation formula that can run inside the database

db_flights %>% dbplot_raster( sched_dep_time, sched_arr_time, mean(distance, na.rm = TRUE) )

• Increase or decrease for more, or less, definition. The resolutionargument controls that, it defaults to 100

db_flights %>% dbplot_raster( sched_dep_time, sched_arr_time, mean(distance, na.rm = TRUE), resolution = 20 )

Bar Plot

• dbplot_bar() defaults to a tally() of each value in a discrete variable

db_flights %>% dbplot_bar(origin)

• Pass a formula, and column name, that will be operated for each value in the discrete variable

db_flights %>% dbplot_bar(origin, avg_delay = mean(dep_delay, na.rm = TRUE))

Line plot

• dbplot_line() defaults to a tally() of each value in a discrete variable

db_flights %>% dbplot_line(month)

• Pass a formula that will be operated for each value in the discrete variable

db_flights %>% dbplot_line(month, avg_delay = mean(dep_delay, na.rm = TRUE))

Boxplot

It expects a discrete variable to group by, and a continuous variable to calculate the percentiles and IQR. It doesn’t calculate outliers. It has been tested with the following connections:

• MS SQL Server
• PostgreSQL
• Oracle
• sparklyr

Here is an example using dbplot_boxplot() with a local data frame:

nycflights13::flights %>% dbplot_boxplot(origin, distance)

Calculation functions

If a more customized plot is needed, the data the underpins the plots can also be accessed:

1. db_compute_bins() - Returns a data frame with the bins and count per bin
2. db_compute_count() - Returns a data frame with the count per discrete value
3. db_compute_raster() - Returns a data frame with the results per x/y intersection
4. db_compute_raster2() - Returns same as db_compute_raster()function plus the coordinates of the x/y boxes
5. db_compute_boxplot() - Returns a data frame with boxplot calculations

db_flights %>% db_compute_bins(arr_delay) #> # A tibble: 28 x 2 #> arr_delay count #> #> 1 NA 9430 #> 2 -86 5325 #> 3 -40.7 207999 #> 4 4.53 79784 #> 5 49.8 19063 #> 6 95.1 7890 #> 7 140. 3746 #> 8 186. 1742 #> 9 231. 921 #> 10 276. 425 #> # … with 18 more rows

The data can be piped to a plot

db_flights %>% filter(arr_delay < 100 , arr_delay > -50) %>% db_compute_bins(arr_delay) %>% ggplot() + geom_col(aes(arr_delay, count, fill = count))

db_bin()

Uses ‘rlang’ to build the formula needed to create the bins of a numeric variable in an un-evaluated fashion. This way, the formula can be then passed inside a dplyr verb.

db_bin(var) #> (((max(var, na.rm = TRUE) - min(var, na.rm = TRUE))/30) * ifelse(as.integer(floor((var - #> min(var, na.rm = TRUE))/((max(var, na.rm = TRUE) - min(var, #> na.rm = TRUE))/30))) == 30, as.integer(floor((var - min(var, #> na.rm = TRUE))/((max(var, na.rm = TRUE) - min(var, na.rm = TRUE))/30))) - #> 1, as.integer(floor((var - min(var, na.rm = TRUE))/((max(var, #> na.rm = TRUE) - min(var, na.rm = TRUE))/30))))) + min(var, #> na.rm = TRUE)

db_flights %>% group_by(x = !! db_bin(arr_delay)) %>% tally() #> # Source: lazy query [?? x 2] #> # Database: sqlite 3.29.0 [:memory:] #> x n #> #> 1 NA 9430 #> 2 -86 5325 #> 3 -40.7 207999 #> 4 4.53 79784 #> 5 49.8 19063 #> 6 95.1 7890 #> 7 140. 3746 #> 8 186. 1742 #> 9 231. 921 #> 10 276. 425 #> # … with more rows

db_flights %>% filter(!is.na(arr_delay)) %>% group_by(x = !! db_bin(arr_delay)) %>% tally()%>% collect %>% ggplot() + geom_col(aes(x, n))