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INSA PathoGenomics insapathogenomics

Bioinformatics Unit of the Portuguese National Institute of Health Dr. Ricardo Jorge (INSA),

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  1. A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data
    Python 50 6
  2. Identify the sequence context flanking SNPs of interest and screen for potential profiles/signatures of interest
    Python 10 7
  3. Forked from ibigen/ReporType
    Flexible bioinformatics tool for targeted loci screening and typing
    Python 4 2
  4. This repository contains the scripts used for the cluster congruence analysis of multiple bioinformatics pipelines and species.
    Python 2 2
  5. Forked from SantosJGND/algn2pheno
    A bioinformatics tool for rapid screening of genetic features (nt or aa changes) potentially linked to specific phenotypes
    Python 1
  6. A surveillance-oriented script to facilitate the deployment of the EFSA's Whole Genome Sequencing OneHealth analytical pipeline
    Python 1 1