GitHub - kdkorthauer/scDD: R package to identify genes with differential distributions in single-cell RNA-seq (original) (raw)

scDD: An R package to identify differentially distributed genes in scRNA-seq

Installation

The Bioconductor landing page ishttps://bioconductor.org/packages/scDD. To install, make sure you have the current version of Bioconductor, and use the following commands:

install.packages("BiocManager") BiocManager::install("scDD")

Quick Start

For examples and tips on using the package, please see the vignette PDFherewhich you can alternatively bring up by typing

after installing and loading the package into R.

Getting Help

Please send bug reports and feature requests by sending a message to Bioconductor Support at https://support.bioconductor.orgor by opening a new issue onthis page

Citation

Please cite the following publication if you use scDD in your work:

Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C. A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Genome Biology. 2016 Oct 25;17(1):222.https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1077-y

You can obtain this citation within R by typing