GitHub - malmaud/TensorFlow.jl: A Julia wrapper for TensorFlow (original) (raw)

TensorFlow

A wrapper around TensorFlow, a popular open source machine learning framework from Google.

Documentation

Other resources:

• TensorFlow Dev Summit 2019 presentation
• JuliaCon 2017 presentation

Why use TensorFlow.jl?

See a list of advantagesover the Python API.

What's changed recently?

See NEWS.

Basic usage

using TensorFlow using Test

sess = TensorFlow.Session()

x = TensorFlow.constant(Float64[1,2]) y = TensorFlow.Variable(Float64[3,4]) z = TensorFlow.placeholder(Float64)

w = exp(x + z + -y)

run(sess, TensorFlow.global_variables_initializer()) res = run(sess, w, Dict(z=>Float64[1,2])) @test res[1] ≈ exp(-1)

Installation

Install via

To enable support for GPU usage on Linux, set an environment variable TF_USE_GPU to "1" and then rebuild the package. eg

ENV["TF_USE_GPU"] = "1" Pkg.build("TensorFlow")

CUDA 8.0 and cudnn are required for GPU usage. If you need to use a different version of CUDA, or if you want GPU support on Mac OS X, you can compile libtensorflow from source.

Initial precompilation (eg, the first time you type using TensorFlow) can take around five minutes, so please be patient. Subsequent load times will only be a few seconds.

Installation via Docker

Simply run docker run -it malmaud/julia:tf to open a Julia REPL that already has TensorFlow installed:

julia> using TensorFlow julia>

For a version of TensorFlow.jl that utilizes GPUs, use nvidia-docker run -it malmaud/julia:tf_gpu. Download nvidia-docker if you don't already have it.

Logistic regression example

Realistic demonstration of using variable scopes and advanced optimizers

using TensorFlow using Distributions using Printf

Generate some synthetic data

x = randn(100, 50) w = randn(50, 10) y_prob = exp.(x*w) y_prob ./= sum(y_prob,dims=2)

function draw(probs) y = zeros(size(probs)) for i in 1:size(probs, 1) idx = rand(Categorical(probs[i, :])) y[i, idx] = 1 end return y end

y = draw(y_prob)

Build the model

sess = Session(Graph())

X = placeholder(Float64, shape=[-1, 50]) Y_obs = placeholder(Float64, shape=[-1, 10])

variable_scope("logisitic_model"; initializer=Normal(0, .001)) do global W = get_variable("W", [50, 10], Float64) global B = get_variable("B", [10], Float64) end

Y=nn.softmax(X*W + B)

Loss = -reduce_sum(log(Y).*Y_obs) optimizer = train.AdamOptimizer() minimize_op = train.minimize(optimizer, Loss) saver = train.Saver()

Run training

run(sess, global_variables_initializer()) checkpoint_path = mktempdir() @info("Checkpoint files saved in $checkpoint_path") for epoch in 1:100 cur_loss, _ = run(sess, [Loss, minimize_op], Dict(X=>x, Y_obs=>y)) println(@sprintf("Current loss is %.2f.", cur_loss)) train.save(saver, sess, joinpath(checkpoint_path, "logistic"), global_step=epoch) end

Troubleshooting

If you see issues from the ccall or python interop, try updating TensorFlow both in Julia and in the global python install:

julia> Pkg.build("TensorFlow")

$ pip install --upgrade tensorflow

Citing

If you use this software in your research, we would really appreciate if you cite us.

Malmaud, J. & White, L. (2018). TensorFlow.jl: An Idiomatic Julia Front End for TensorFlow. Journal of Open Source Software, 3(31), 1002, https://doi.org/10.21105/joss.01002

Optional: Using a custom TensorFlow binary

To build TensorFlow from source, or if you already have a TensorFlow binary that you wish to use, follow these instructions. This is recommended by Google for maximum performance, and is currently needed for Mac OS X GPU support.

For Linux users, a convenience script is included to use Docker to easily build the library. Just install docker and run julia build_libtensorflow.so from the "deps" directory of the TensorFlow.jl package. Note that this method may not link to all libraries available on the target system such as Intel MKL.