GitHub - marta-nazzari/CODA: This repository contains the necessary files for employing the CODA workflow for the preprocessing of RNA-Seq data prepared using the NEXTFLEX® Combo-Seq library prep kit (original) (raw)

After the first use, every time you re-run the CODA_preprocess.sh script, you only need to perform step 6.
System requirements: since CODA uses STAR as its aligner, it requires at least 10 GB of RAM to work.

Before you start using CODA, some initial setup is required:

Alternatively, you can manually install the required tools on your machine (in which case, the calls to conda environments activation and deactivation need to be commented out). CODA uses: