Fix RBD level coloring and filter by joverlee521 · Pull Request #1094 · nextstrain/ncov (original) (raw)
added 3 commits
The filter level was originally added in
5a71d77
for RBD level but was the wrong field name.
The correct filter rbd_level was later added in
1b4846a.
The clade labels were updated in #1065.
Update the clade label so that the assign_rbd_levels script can find
the correct basal clade.
I had considered pulling this value out as a parameter in the config YAML, but the original commit message¹ implies that this should not be configurable.
¹ fb5f44e
The JSON output from augur clades was updated to separate nodes
and branches in nextstrain/augur#728 so now
the assign_rbd_levels script needs to parse the branches in order
to find the basal node.
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