GitHub - rcastelo/GenomicScores: Provide support to store and retrieve genomic scores associated to nucleotide positions along a genome (original) (raw)

GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor

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Current build status

The GenomicScores package facilitates an efficient storage and seamless access of genomic scores, and their integration into genome analysis workflows on top of R and Bioconductor. Users using these genomic scores should cite their original source included in the metadata of the scores and accessible through the function citation(). For citing GenomicScores as a software package, please use the following reference:

Puigdevall, P. and Castelo. R. GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor. Bioinformatics, 18:3208-3210, 2018.

Installation

This is the development version of the R/Bioconductor package GenomicScores. This version is unstable and should be used only to test new features. If you are looking for the release version of this package please go to its package release landing page at https://bioconductor.org/packages/GenomicScores and follow the instructions there to install it.

If you were really looking for this development version, then to install it you If you were really looking for this development version, then to install it you need first to install the development version of Bioconductor and then type the following line from the R shell:

BiocManager::install("GenomicScores", version = "devel")

Alternatively, you can install it from GitHub using the remotes package.

remotes::install_github("rcastelo/GenomicScores")

Questions, bug reports and issues

For questions and bug reports regarding the release version of GenomicScoresplease use the Bioconductor support site. For bug reports and issues regarding this development version of GenomicScoresplease use the GitHub issues tab at the top-left of this page.

Contributing

Contributions to the software codebase of GenomicScores are welcome as long as contributors abide to the terms of the Bioconductor Contributor Code of Conduct. If you want to contribute to the development of GenomicScores please open anissue to start discussing your suggestion or, in case of a bugfix or a straightforward feature, directly apull request.

Funding

This software project is supported in part by the SpanishMinistry of Science, Innovation and Universities.