GitHub - ressomlab/MetID: This repo contains R package MetID. (original) (raw)

MetID

Description

This R package implements Baysian approach with pathway and network information to prioritize putative identifications of metabolites.

Installation

You can install MetID package from GitHub with:

install.packages("devtools")

devtools::install_github("ressomlab/MetID")

Example

library(MetID)

check if colnames of dataset meet requirement

names(demo1)

change colnames

colnames(demo1) <- c('query_m.z','name','formula','exact_m.z','pubchem_cid','kegg_id')

get scores

out <- get_scores_for_LC_MS(demo1, type = 'data.frame', na='-', mode='POS',iterations=1000)