GitHub - robsyme/features: Custom dev container features (original) (raw)

Overview

A modest set of dev container Features features useful for authoring and testing Nextflow pipelines

Features

This repository contains a collection of two Features - nextflow and nf-test. Each sub-section below shows a sample devcontainer.json alongside example usage of the Feature. At present, there are no options available for the nextflow feature, so the empty object is provided after the feature ID:

nextflow

Installs Nextflow and prerequisites (Java)

$ nextflow -version

  N E X T F L O W
  version 22.10.4 build 5836
  created 09-12-2022 09:58 UTC (04:58 EDT)
  cite doi:10.1038/nbt.3820
  http://nextflow.io

nf-test

Installs nf-test

$ nf-test version

🚀 nf-test 0.7.1 https://code.askimed.com/nf-test (c) 2021 - 2022 Lukas Forer and Sebastian Schoenherr

Nextflow Runtime:

  N E X T F L O W
  version 22.10.4 build 5836
  created 09-12-2022 09:58 UTC (04:58 EDT)
  cite doi:10.1038/nbt.3820
  http://nextflow.io