GitHub - tamerh/biobtreeR: Bioconductor R package for biobtree (original) (raw)
biobtreeR
Bioconductor R package for genomic research via biobtree. It aims to provide an alternative to existing packages with abilty process large and diverse datasets effectievly and allows executing basic or advanced queries .
For more detail and documentation check the Bioconductor page
Install
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("biobtreeR")
Usage
library(biobtreeR)
directory for the tool files
bbUseOutDir("specify your directory")
default database for most studied dataset and organism genomes
once it is retrieved it is saved to your directory for later reuse
check document for included dataset or other builtin databases or build custom data
bbBuiltInDB()
starts server for executing queries inside R pipelines and provide web ui for expolaration with examples
web interface address http://localhost:8888/ui/
bbStart()
Demo
Demo of web interface which covers all the datasets with examples