GitHub - zuinelena3/BatChef (original) (raw)

BatChef is an R package that:

• implements a variety of correction methods;
• provides quantitative metrics to evaluate the performance of the correction methods, including the Wasserstein distance, Local Inverse Simpson's Index (LISI), Average Silhouette Width (ASW), and Adjusted Rand Index (ARI);
• can be used as a guideline to identify the most appropriate batch effects correction method based on data-specific characteristics.

Installation

if (!requireNamespace("BiocManager", quietly = TRUE)) { install.packages("BiocManager") } BiocManager::install("BatChef")