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Papers by Antonio Tadeu Gomes

Research paper thumbnail of Physics-Aware Neural Networks for Boundary Layer Linear Problems

arXiv (Cornell University), Jul 15, 2022

Research paper thumbnail of The MHM Method for Elasticity on Polytopal Meshes

HAL (Le Centre pour la Communication Scientifique Directe), Sep 9, 2020

Research paper thumbnail of Rapid Prototyping of Science Gateways in the Brazilian National HPC Network

Research paper thumbnail of DANCE: A Framework for the Distributed Assessment of Network Centralities

arXiv (Cornell University), Aug 4, 2011

Research paper thumbnail of A Multiscale Hybrid Method

HAL (Le Centre pour la Communication Scientifique Directe), Dec 21, 2022

Research paper thumbnail of Modelling and Mining of Patient Pathways: A Scoping Review

arXiv (Cornell University), Jun 4, 2022

Research paper thumbnail of Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing

2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID)

Research paper thumbnail of Towards a Ubiquitous Healthcare System for Acute Myocardial Infarction Patients in Brazil

Fourth Annual IEEE International Conference on Pervasive Computing and Communications Workshops (PERCOMW'06)

Research paper thumbnail of Analyzing flight delay prediction under concept drift

Research paper thumbnail of On the Implementation of a Scalable Simulator for Multiscale Hybrid-Mixed Methods

ArXiv, 2017

The family of Multiscale Hybrid-Mixed (MHM) finite element methods has received considerable atte... more The family of Multiscale Hybrid-Mixed (MHM) finite element methods has received considerable attention from the mathematics and engineering community in the last few years. The MHM methods allow solving highly heterogeneous problems on coarse meshes while providing solutions with high-order precision. It embeds independent local problems which are responsible for upscaling unresolved scales into the numerical solution. These local contributions are brought together through a global problem defined on the skeleton of the coarse partition. Since the local problems are completely independent, they can be easily computed in parallel. In this paper, we present two simulator prototypes specifically crafted for the MHM methods, which adopt two different implementation strategies: (i) a multi-programming language approach, each language tackling different simulation issues; and (ii) a classical, single-programming language approach. Specifically, we use C++ for numerical computation of the ...

Research paper thumbnail of A comprehensive performance evaluation of the BinLPT workload‐aware loop scheduler

Concurrency and Computation: Practice and Experience, 2019

SummaryWorkload‐aware loop schedulers were introduced to deliver better performance than classica... more SummaryWorkload‐aware loop schedulers were introduced to deliver better performance than classical loop scheduling strategies. However, they presented limitations such as inflexible built‐in workload estimators and suboptimal chunk scheduling. Targeting these challenges, we proposed previously a workload‐aware scheduling strategy called BinLPT, which relies on three features: (i) user‐supplied estimations of the workload of the loop; (ii) a greedy heuristic that adaptively partitions the iteration space in several chunks; and (iii) a scheduling scheme based on the Longest Processing Time (LPT) rule and on‐demand technique. In this paper, we present two new contributions to the state‐of‐the‐art. First, we introduce a multiloop support feature to BinLPT, which enables the reuse of estimations across loops. Based on this feature, we integrated BinLPT into a real‐world elastodynamics application, and we evaluated it running on a supercomputer. Second, we present an evaluation of BinLPT ...

Research paper thumbnail of Modeling QoS provision on adaptable communication environments

ICC 2001. IEEE International Conference on Communications. Conference Record (Cat. No.01CH37240)

Research paper thumbnail of Uma arquitetura adaptável para provisão de QoS na internet

Research paper thumbnail of Enabling re-configurability on component-based programmable nodes

Research paper thumbnail of QoSOS: An Adaptable Architecture for QoS Provisioning in Network Operating Systems

Journal of Communication and Information Systems, 2003

Research paper thumbnail of Modeling QoS provision on adaptable communication environments

Research paper thumbnail of Identification and Characterization of Memory Allocation Anomalies in High-Performance Computing Applications

Anais do Simpósio em Sistemas Computacionais de Alto Desempenho (WSCAD)

A memory allocation anomaly occurs when the allocation of a set of heap blocks imposes an unneces... more A memory allocation anomaly occurs when the allocation of a set of heap blocks imposes an unnecessary overhead on the execution of an application. In this paper, we propose a method for identifying, locating, characterizing and fixing allocation anomalies, and a tool for developers to apply the method. We experiment our method and tool with a numerical simulator aimed at approximating the solutions to partial differential equations using a finite element method. We show that taming allocation anomalies in this simulator reduces the memory footprint of its processes by 37.27% and the execution time by 16.52%. We conclude that the developer of high-performance computing applications can benefit from the method and tool during the software development cycle.

Research paper thumbnail of Uma Plataforma de Rede Definida por Software para Ambientes Convergentes de Computação Paralela

Anais do XXXVII Simpósio Brasileiro de Redes de Computadores e Sistemas Distribuídos (SBRC 2019)

O crescimento no volume dos dados tem revolucionado os negócios e a ciência ao mesmo tempo que de... more O crescimento no volume dos dados tem revolucionado os negócios e a ciência ao mesmo tempo que demanda capacidade cada vez maior dos recursos computacionais. As plataformas de computação de alto desempenho (HPC), tradicionalmente empregadas em simulações numéricas massivamente paralelas, oferecem capacidade computacional que pode ser aproveitada na análise de Big Data. No entanto, a convergência de Big Data e HPC deve ser examinada sob vários aspectos; em particular, a infraestrutura de rede precisa ajustar-se a demandas de aplicações bem distintas. O modelo de rede definida por software (SDN) pode favorecer essa convergência, graças à sua visão global da rede e sua programabilidade. Nesse contexto, apresentamos uma plataforma SDN capaz de suprir, de forma convergente, os requisitos de aplicações Big Data e HPC. A plataforma aplica mecanismos de roteamento mais adequados a cada perfil de tráfego, permitindo assim a redução no tempo de execução de aplicações. Demonstramos por meio de...

Research paper thumbnail of A Multiscale Hybrid-Mixed Method for the Elastodynamic Model with Rough Coefficients

Proceedings of the XXXVIII Iberian Latin American Congress on Computational Methods in Engineering

Research paper thumbnail of WISP: A pattern-based approach to the interchange of scientific workflow specifications

Concurrency and Computation: Practice and Experience

Research paper thumbnail of Physics-Aware Neural Networks for Boundary Layer Linear Problems

arXiv (Cornell University), Jul 15, 2022

Research paper thumbnail of The MHM Method for Elasticity on Polytopal Meshes

HAL (Le Centre pour la Communication Scientifique Directe), Sep 9, 2020

Research paper thumbnail of Rapid Prototyping of Science Gateways in the Brazilian National HPC Network

Research paper thumbnail of DANCE: A Framework for the Distributed Assessment of Network Centralities

arXiv (Cornell University), Aug 4, 2011

Research paper thumbnail of A Multiscale Hybrid Method

HAL (Le Centre pour la Communication Scientifique Directe), Dec 21, 2022

Research paper thumbnail of Modelling and Mining of Patient Pathways: A Scoping Review

arXiv (Cornell University), Jun 4, 2022

Research paper thumbnail of Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing

2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID)

Research paper thumbnail of Towards a Ubiquitous Healthcare System for Acute Myocardial Infarction Patients in Brazil

Fourth Annual IEEE International Conference on Pervasive Computing and Communications Workshops (PERCOMW'06)

Research paper thumbnail of Analyzing flight delay prediction under concept drift

Research paper thumbnail of On the Implementation of a Scalable Simulator for Multiscale Hybrid-Mixed Methods

ArXiv, 2017

The family of Multiscale Hybrid-Mixed (MHM) finite element methods has received considerable atte... more The family of Multiscale Hybrid-Mixed (MHM) finite element methods has received considerable attention from the mathematics and engineering community in the last few years. The MHM methods allow solving highly heterogeneous problems on coarse meshes while providing solutions with high-order precision. It embeds independent local problems which are responsible for upscaling unresolved scales into the numerical solution. These local contributions are brought together through a global problem defined on the skeleton of the coarse partition. Since the local problems are completely independent, they can be easily computed in parallel. In this paper, we present two simulator prototypes specifically crafted for the MHM methods, which adopt two different implementation strategies: (i) a multi-programming language approach, each language tackling different simulation issues; and (ii) a classical, single-programming language approach. Specifically, we use C++ for numerical computation of the ...

Research paper thumbnail of A comprehensive performance evaluation of the BinLPT workload‐aware loop scheduler

Concurrency and Computation: Practice and Experience, 2019

SummaryWorkload‐aware loop schedulers were introduced to deliver better performance than classica... more SummaryWorkload‐aware loop schedulers were introduced to deliver better performance than classical loop scheduling strategies. However, they presented limitations such as inflexible built‐in workload estimators and suboptimal chunk scheduling. Targeting these challenges, we proposed previously a workload‐aware scheduling strategy called BinLPT, which relies on three features: (i) user‐supplied estimations of the workload of the loop; (ii) a greedy heuristic that adaptively partitions the iteration space in several chunks; and (iii) a scheduling scheme based on the Longest Processing Time (LPT) rule and on‐demand technique. In this paper, we present two new contributions to the state‐of‐the‐art. First, we introduce a multiloop support feature to BinLPT, which enables the reuse of estimations across loops. Based on this feature, we integrated BinLPT into a real‐world elastodynamics application, and we evaluated it running on a supercomputer. Second, we present an evaluation of BinLPT ...

Research paper thumbnail of Modeling QoS provision on adaptable communication environments

ICC 2001. IEEE International Conference on Communications. Conference Record (Cat. No.01CH37240)

Research paper thumbnail of Uma arquitetura adaptável para provisão de QoS na internet

Research paper thumbnail of Enabling re-configurability on component-based programmable nodes

Research paper thumbnail of QoSOS: An Adaptable Architecture for QoS Provisioning in Network Operating Systems

Journal of Communication and Information Systems, 2003

Research paper thumbnail of Modeling QoS provision on adaptable communication environments

Research paper thumbnail of Identification and Characterization of Memory Allocation Anomalies in High-Performance Computing Applications

Anais do Simpósio em Sistemas Computacionais de Alto Desempenho (WSCAD)

A memory allocation anomaly occurs when the allocation of a set of heap blocks imposes an unneces... more A memory allocation anomaly occurs when the allocation of a set of heap blocks imposes an unnecessary overhead on the execution of an application. In this paper, we propose a method for identifying, locating, characterizing and fixing allocation anomalies, and a tool for developers to apply the method. We experiment our method and tool with a numerical simulator aimed at approximating the solutions to partial differential equations using a finite element method. We show that taming allocation anomalies in this simulator reduces the memory footprint of its processes by 37.27% and the execution time by 16.52%. We conclude that the developer of high-performance computing applications can benefit from the method and tool during the software development cycle.

Research paper thumbnail of Uma Plataforma de Rede Definida por Software para Ambientes Convergentes de Computação Paralela

Anais do XXXVII Simpósio Brasileiro de Redes de Computadores e Sistemas Distribuídos (SBRC 2019)

O crescimento no volume dos dados tem revolucionado os negócios e a ciência ao mesmo tempo que de... more O crescimento no volume dos dados tem revolucionado os negócios e a ciência ao mesmo tempo que demanda capacidade cada vez maior dos recursos computacionais. As plataformas de computação de alto desempenho (HPC), tradicionalmente empregadas em simulações numéricas massivamente paralelas, oferecem capacidade computacional que pode ser aproveitada na análise de Big Data. No entanto, a convergência de Big Data e HPC deve ser examinada sob vários aspectos; em particular, a infraestrutura de rede precisa ajustar-se a demandas de aplicações bem distintas. O modelo de rede definida por software (SDN) pode favorecer essa convergência, graças à sua visão global da rede e sua programabilidade. Nesse contexto, apresentamos uma plataforma SDN capaz de suprir, de forma convergente, os requisitos de aplicações Big Data e HPC. A plataforma aplica mecanismos de roteamento mais adequados a cada perfil de tráfego, permitindo assim a redução no tempo de execução de aplicações. Demonstramos por meio de...

Research paper thumbnail of A Multiscale Hybrid-Mixed Method for the Elastodynamic Model with Rough Coefficients

Proceedings of the XXXVIII Iberian Latin American Congress on Computational Methods in Engineering

Research paper thumbnail of WISP: A pattern-based approach to the interchange of scientific workflow specifications

Concurrency and Computation: Practice and Experience