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Papers by Brigitte Bouchet

Research paper thumbnail of Stereological estimation for layered structures based on slabs perpendicular to a surface

Journal of Microscopy-oxford, 2008

Research paper thumbnail of Involvement of the Protein Network in the in vitroDegradation of Starch from Spaghetti and Lasagne: a Microscopic and Enzymic Study

Journal of Cereal Science, 1998

This study aimed to determine the involvement of the protein network in thein vitrodegradation of... more This study aimed to determine the involvement of the protein network in thein vitrodegradation of starch from intact pasta strands. The physical structure of pasta was characterised during enzymic treatment by microscopy, and hydrolysis kinetics were interpreted. When incubated with human salivaryalpha-amylase (HSA), the protein network remained intact, retarding starch degradation. The presence of proteases contaminating pig pancreaticalpha–amylase contributed to

Research paper thumbnail of Two Loci Control Phytoglycogen Production in the Monocellular Green Alga Chlamydomonas reinhardtii

Research paper thumbnail of Nanocrystallized thin films of transition metal obtained by low energy cluster beam deposition

Scripta Metallurgica et Materialia, 1995

Research paper thumbnail of Endomembrane proteomics reveals putative enzymes involved in cell wall metabolism in wheat grain outer layers

Journal of experimental botany, Jan 13, 2015

Cereal grain outer layers fulfil essential functions for the developing seed such as supplying en... more Cereal grain outer layers fulfil essential functions for the developing seed such as supplying energy and providing protection. In the food industry, the grain outer layers called 'the bran' is valuable since it is rich in dietary fibre and other beneficial nutriments. The outer layers comprise several tissues with a high content in cell wall material. The cell wall composition of the grain peripheral tissues was investigated with specific probes at a stage of active cell wall synthesis. Considerable wall diversity between cell types was revealed. To identify the cellular machinery involved in cell wall synthesis, a subcellular proteomic approach was used targeting the Golgi apparatus where most cell wall polysaccharides are synthesized. The tissues were dissected into outer pericarp and intermediate layers where 822 and 1304 proteins were identified respectively. Many carbohydrate-active enzymes were revealed: some in the two peripheral grain fractions, others only in one t...

Research paper thumbnail of Multiscale characterization of arabinoxylan and β-glucan composite films

Carbohydrate Polymers, 2015

Composite films made with Arabinoxylans (AXs) (with high, middle and low level of substitution by... more Composite films made with Arabinoxylans (AXs) (with high, middle and low level of substitution by arabinose) and (1→3)(1→4)-β-d-glucans (BGs) extracted from cereal cell walls have been prepared and analyzed using microscopy (SEM and LSCFM), DSC, mechanical tests and TD-NMR spectroscopy. The objectives were to correlate molecular and physico-chemical properties of films with mechanical and hydration properties of wheat cell walls. A phase separation phenomenon was observed for films made with highly substituted AXs and BGs at a ratio AX/BG of 60/40. This phase separation was correlated with lower dipolar interactions between polysaccharide chains and a decrease of ultimate strain and stress of films. Highly substituted AX and BG composite films exhibited very weak mechanical properties in agreement with weaker interactions between the polymer chains. This effect was supported by NMR results showing that interactions between AXs and BGs decreased with increased substitution of AXs in composite films. Lower dipolar interactions between polysaccharides favored the water mobility in relation with a higher specific surface area of polysaccharides in films but also higher distances between polysaccharide chains so larger nanopores in composite films made within highly substituted AXs. These multiscale characterizations agreed with the structural changes observed in wheat grain during its development.

Research paper thumbnail of Chlamydomonas veinhardtii as a Model Microbial System to lnvestigate the Biosynthesis of the Plant Amylopectin Crystal

Wide-angle powder x-ray diffraction analysis was carried out on starch extracted from wild-type a... more Wide-angle powder x-ray diffraction analysis was carried out on starch extracted from wild-type and mutant Chlamydomonas rein- hardfii cells. Strains containing no defective starch synthases as well as mutants carrying a disrupted granule-bound starch synthase structural gene displayed the A type of diffraction pattern with a high degree of crystallinity. Mutants carrying a defect for the major soluble starch synthase

Research paper thumbnail of Stereological estimation of cell wall density of DR12 tomato mutant using three-dimensional confocal imaging

Research paper thumbnail of Immunolabelling of intervessel pits for polysaccharides and lignin helps in understanding their hydraulic properties in Populus tremula × alba

Annals of botany, Jan 30, 2014

The efficiency and safety functions of xylem hydraulics are strongly dependent on the pits that c... more The efficiency and safety functions of xylem hydraulics are strongly dependent on the pits that connect the xylem vessels. However, little is known about their biochemical composition and thus about their hydraulic properties. In this study, the distribution of the epitopes of different wall components (cellulose, hemicelluloses, pectins and lignins) was analysed in intervessel pits of hybrid poplar (Populus tremula × alba). Immunogold labelling with transmission electron microscopy was carried out with a set of antibodies raised against different epitopes for each wall polysaccharide type and for lignins. Analyses were performed on both immature and mature vessels. The effect of sap ionic strength on xylem conductance was also tested. In mature vessels, the pit membrane (PM) was composed of crystalline cellulose and lignins. None of the hemicellulose epitopes were found in the PM. Pectin epitopes in mature vessels were highly concentrated in the annulus, a restricted area of the PM...

Research paper thumbnail of GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato

Research paper thumbnail of Granule-bound starch synthase I

European Journal of Biochemistry, 2002

Starch defines a semicrystalline polymer made of two different polysaccharide fractions. The A- a... more Starch defines a semicrystalline polymer made of two different polysaccharide fractions. The A- and B-type crystalline lattices define the distinct structures reported in cereal and tuber starches, respectively. Amylopectin, the major fraction of starch, is thought to be chiefly responsible for this semicrystalline organization while amylose is generally considered as an amorphous polymer with little or no impact on the overall crystalline organization. STA2 represents a Chlamydomonas reinhardtii gene required for both amylose biosynthesis and the presence of significant granule-bound starch synthase I (GBSSI) activity. We show that this locus encodes a 69 kDa starch synthase and report the organization of the corresponding STA2 locus. This enzyme displays a specific activity an order of magnitude higher than those reported for most vascular plants. This property enables us to report a detailed characterization of amylose synthesis both in vivo and in vitro. We show that GBSSI is capable of synthesizing a significant number of crystalline structures within starch. Quantifications of amount and type of crystals synthesized under these conditions show that GBSSI induces the formation of B-type crystals either in close association with pre-existing amorphous amylopectin or by crystallization of entirely de novo synthesized material.

Research paper thumbnail of Physical and chemical transformations of cereal food during oral digestion in human subjects

British Journal of Nutrition, 1998

Research paper thumbnail of Mechanical breakdown and cell wall structure of mealy tomato pericarp tissue

Postharvest Biology and Technology, 2005

Research paper thumbnail of The Wheat Grain Contains Pectic Domains Exhibiting Specific Spatial and Development-Associated Distribution

PLoS ONE, 2014

Cell walls are complex structures surrounding plant cells with a composition that varies among sp... more Cell walls are complex structures surrounding plant cells with a composition that varies among species and even within a species between organs, cell types and development stages. For years, cell walls in wheat grains were described as simple walls consisting mostly of arabinoxylans and mixed-linked beta glucans. Proteomic and transcriptomic studies identified enzyme families involved in the synthesis of many more cell wall polysaccharides in the wheat grains. Here we describe the discovery of pectic domains in wheat grain using monoclonal antibodies and enzymatic treatment to degrade the major cell wall polymers. Distinct spatial distributions were observed for rhamnogalacturonan I present in the endosperm and mostly in the aleurone layer and homogalacturonan especially found in the outer layers, and tight developmental regulations were unveiled. We also uncovered a massive deposition of homogalacturonan via large vesicular bodies in the seed coat (testa) beneath a thick cuticle during development. Our findings raise questions about the function of pectin in wheat grain.

Research paper thumbnail of Change in wall composition of transfer and aleurone cells during wheat grain development

Planta, 2011

In addition to the starchy endosperm, a specialized tissue accumulating storage material, the end... more In addition to the starchy endosperm, a specialized tissue accumulating storage material, the endosperm of wheat grain, comprises the aleurone layer and the transfer cells next to the crease. The transfer cells, located at the ventral region of the grain, are involved in nutrient transfer from the maternal tissues to the developing endosperm. Immunolabeling techniques, Raman spectroscopy, and synchrotron infrared micro-spectroscopy were used to study the chemistry of the transfer cell walls during wheat grain development. The kinetic depositions of the main cell wall polysaccharides of wheat grain endosperm, arabinoxylan, and (1-3)(1-4)-β-glucan in transfer cell walls were different from kinetics previously observed in the aleurone cell walls. While (1-3)(1-4)-β-glucan appeared first in the aleurone cell walls at 90°D, arabinoxylan predominated in the transfer cell walls from 90 to 445°D. Both aleurone and transfer cell walls were enriched in (1-3)(1-4)-β-glucan at the mature stage of wheat grain development. Arabinoxylan was more substituted in the transfer cell walls than in the aleurone walls. However, arabinoxylan was more feruloylated in the aleurone than in the transfer cell walls, whatever the stage of grain development. In the transfer cells, the ferulic acid was less abundant in the outer periclinal walls while para-coumarate was absent. Possible implications of such differences are discussed.

Research paper thumbnail of Brachypodium distachyon grain: identification and subcellular localization of storage proteins

Journal of Experimental Botany, 2010

Seed storage proteins are of great importance in nutrition and in industrial transformation becau... more Seed storage proteins are of great importance in nutrition and in industrial transformation because of their functional properties. Brachypodium distachyon has been proposed as a new model plant to study temperate cereals. The protein composition of Brachypodium grain was investigated by separating the proteins on the basis of their solubility combined with a proteomic approach. Salt-soluble proteins as well as salt-insoluble proteins separated by two-dimensional gel electrophoresis revealed 284 and 120 spots, respectively. Proteins from the major spots were sequenced by mass spectrometry and identified by searching against a Brachypodium putative protein database. Our analysis detected globulins and prolamins but no albumins. Globulins were represented mainly by the 11S type and their solubility properties corresponded to the glutelin found in rice. An in silico search for storage proteins returned more translated genes than expressed products identified by mass spectrometry, particularly in the case of prolamin type proteins, reflecting a strong expression of globulins at the expense of prolamins. Microscopic examination of endosperm cells revealed scarce small-size starch granules surrounded by protein bodies containing 11S globulins. The presence of protein bodies containing glutelins makes B. distachyon closer to rice or oat than to wheat endosperm.

Research paper thumbnail of Down-regulation of an Auxin Response Factor in the tomato induces modification of fine pectin structure and tissue architecture

Journal of Experimental Botany, 2008

Research paper thumbnail of Microscopical Study of the Destructuring of Waxy Maize and Smooth Pea Starches by Shear and Heat at Low Hydration

Journal of Cereal Science, 2001

Research paper thumbnail of Wheat endosperm cell walls: Spatial heterogeneity of polysaccharide structure and composition using micro-scale enzymatic fingerprinting and FT-IR microspectroscopy

Journal of Cereal Science, 2009

Micro-scale enzymatic fingerprinting and FT-IR microspectroscopy were used to investigate changes... more Micro-scale enzymatic fingerprinting and FT-IR microspectroscopy were used to investigate changes of polysaccharide structure and composition in cell walls from wheat endosperm. These methods were applied to transverse and longitudinal sections of wheat grains harvested at maturity and 270°D. Principal component analysis treatment of the data revealed marked differences in the (1,3)-(1,4)-beta-glucans (BG)/arabinoxylans (AX) ratio and in the structure of

Research paper thumbnail of Individual Contribution of Grain Outer Layers and Their Cell Wall Structure to the Mechanical Properties of Wheat Bran

Journal of Agricultural and Food Chemistry, 2003

Research paper thumbnail of Stereological estimation for layered structures based on slabs perpendicular to a surface

Journal of Microscopy-oxford, 2008

Research paper thumbnail of Involvement of the Protein Network in the in vitroDegradation of Starch from Spaghetti and Lasagne: a Microscopic and Enzymic Study

Journal of Cereal Science, 1998

This study aimed to determine the involvement of the protein network in thein vitrodegradation of... more This study aimed to determine the involvement of the protein network in thein vitrodegradation of starch from intact pasta strands. The physical structure of pasta was characterised during enzymic treatment by microscopy, and hydrolysis kinetics were interpreted. When incubated with human salivaryalpha-amylase (HSA), the protein network remained intact, retarding starch degradation. The presence of proteases contaminating pig pancreaticalpha–amylase contributed to

Research paper thumbnail of Two Loci Control Phytoglycogen Production in the Monocellular Green Alga Chlamydomonas reinhardtii

Research paper thumbnail of Nanocrystallized thin films of transition metal obtained by low energy cluster beam deposition

Scripta Metallurgica et Materialia, 1995

Research paper thumbnail of Endomembrane proteomics reveals putative enzymes involved in cell wall metabolism in wheat grain outer layers

Journal of experimental botany, Jan 13, 2015

Cereal grain outer layers fulfil essential functions for the developing seed such as supplying en... more Cereal grain outer layers fulfil essential functions for the developing seed such as supplying energy and providing protection. In the food industry, the grain outer layers called 'the bran' is valuable since it is rich in dietary fibre and other beneficial nutriments. The outer layers comprise several tissues with a high content in cell wall material. The cell wall composition of the grain peripheral tissues was investigated with specific probes at a stage of active cell wall synthesis. Considerable wall diversity between cell types was revealed. To identify the cellular machinery involved in cell wall synthesis, a subcellular proteomic approach was used targeting the Golgi apparatus where most cell wall polysaccharides are synthesized. The tissues were dissected into outer pericarp and intermediate layers where 822 and 1304 proteins were identified respectively. Many carbohydrate-active enzymes were revealed: some in the two peripheral grain fractions, others only in one t...

Research paper thumbnail of Multiscale characterization of arabinoxylan and β-glucan composite films

Carbohydrate Polymers, 2015

Composite films made with Arabinoxylans (AXs) (with high, middle and low level of substitution by... more Composite films made with Arabinoxylans (AXs) (with high, middle and low level of substitution by arabinose) and (1→3)(1→4)-β-d-glucans (BGs) extracted from cereal cell walls have been prepared and analyzed using microscopy (SEM and LSCFM), DSC, mechanical tests and TD-NMR spectroscopy. The objectives were to correlate molecular and physico-chemical properties of films with mechanical and hydration properties of wheat cell walls. A phase separation phenomenon was observed for films made with highly substituted AXs and BGs at a ratio AX/BG of 60/40. This phase separation was correlated with lower dipolar interactions between polysaccharide chains and a decrease of ultimate strain and stress of films. Highly substituted AX and BG composite films exhibited very weak mechanical properties in agreement with weaker interactions between the polymer chains. This effect was supported by NMR results showing that interactions between AXs and BGs decreased with increased substitution of AXs in composite films. Lower dipolar interactions between polysaccharides favored the water mobility in relation with a higher specific surface area of polysaccharides in films but also higher distances between polysaccharide chains so larger nanopores in composite films made within highly substituted AXs. These multiscale characterizations agreed with the structural changes observed in wheat grain during its development.

Research paper thumbnail of Chlamydomonas veinhardtii as a Model Microbial System to lnvestigate the Biosynthesis of the Plant Amylopectin Crystal

Wide-angle powder x-ray diffraction analysis was carried out on starch extracted from wild-type a... more Wide-angle powder x-ray diffraction analysis was carried out on starch extracted from wild-type and mutant Chlamydomonas rein- hardfii cells. Strains containing no defective starch synthases as well as mutants carrying a disrupted granule-bound starch synthase structural gene displayed the A type of diffraction pattern with a high degree of crystallinity. Mutants carrying a defect for the major soluble starch synthase

Research paper thumbnail of Stereological estimation of cell wall density of DR12 tomato mutant using three-dimensional confocal imaging

Research paper thumbnail of Immunolabelling of intervessel pits for polysaccharides and lignin helps in understanding their hydraulic properties in Populus tremula × alba

Annals of botany, Jan 30, 2014

The efficiency and safety functions of xylem hydraulics are strongly dependent on the pits that c... more The efficiency and safety functions of xylem hydraulics are strongly dependent on the pits that connect the xylem vessels. However, little is known about their biochemical composition and thus about their hydraulic properties. In this study, the distribution of the epitopes of different wall components (cellulose, hemicelluloses, pectins and lignins) was analysed in intervessel pits of hybrid poplar (Populus tremula × alba). Immunogold labelling with transmission electron microscopy was carried out with a set of antibodies raised against different epitopes for each wall polysaccharide type and for lignins. Analyses were performed on both immature and mature vessels. The effect of sap ionic strength on xylem conductance was also tested. In mature vessels, the pit membrane (PM) was composed of crystalline cellulose and lignins. None of the hemicellulose epitopes were found in the PM. Pectin epitopes in mature vessels were highly concentrated in the annulus, a restricted area of the PM...

Research paper thumbnail of GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato

Research paper thumbnail of Granule-bound starch synthase I

European Journal of Biochemistry, 2002

Starch defines a semicrystalline polymer made of two different polysaccharide fractions. The A- a... more Starch defines a semicrystalline polymer made of two different polysaccharide fractions. The A- and B-type crystalline lattices define the distinct structures reported in cereal and tuber starches, respectively. Amylopectin, the major fraction of starch, is thought to be chiefly responsible for this semicrystalline organization while amylose is generally considered as an amorphous polymer with little or no impact on the overall crystalline organization. STA2 represents a Chlamydomonas reinhardtii gene required for both amylose biosynthesis and the presence of significant granule-bound starch synthase I (GBSSI) activity. We show that this locus encodes a 69 kDa starch synthase and report the organization of the corresponding STA2 locus. This enzyme displays a specific activity an order of magnitude higher than those reported for most vascular plants. This property enables us to report a detailed characterization of amylose synthesis both in vivo and in vitro. We show that GBSSI is capable of synthesizing a significant number of crystalline structures within starch. Quantifications of amount and type of crystals synthesized under these conditions show that GBSSI induces the formation of B-type crystals either in close association with pre-existing amorphous amylopectin or by crystallization of entirely de novo synthesized material.

Research paper thumbnail of Physical and chemical transformations of cereal food during oral digestion in human subjects

British Journal of Nutrition, 1998

Research paper thumbnail of Mechanical breakdown and cell wall structure of mealy tomato pericarp tissue

Postharvest Biology and Technology, 2005

Research paper thumbnail of The Wheat Grain Contains Pectic Domains Exhibiting Specific Spatial and Development-Associated Distribution

PLoS ONE, 2014

Cell walls are complex structures surrounding plant cells with a composition that varies among sp... more Cell walls are complex structures surrounding plant cells with a composition that varies among species and even within a species between organs, cell types and development stages. For years, cell walls in wheat grains were described as simple walls consisting mostly of arabinoxylans and mixed-linked beta glucans. Proteomic and transcriptomic studies identified enzyme families involved in the synthesis of many more cell wall polysaccharides in the wheat grains. Here we describe the discovery of pectic domains in wheat grain using monoclonal antibodies and enzymatic treatment to degrade the major cell wall polymers. Distinct spatial distributions were observed for rhamnogalacturonan I present in the endosperm and mostly in the aleurone layer and homogalacturonan especially found in the outer layers, and tight developmental regulations were unveiled. We also uncovered a massive deposition of homogalacturonan via large vesicular bodies in the seed coat (testa) beneath a thick cuticle during development. Our findings raise questions about the function of pectin in wheat grain.

Research paper thumbnail of Change in wall composition of transfer and aleurone cells during wheat grain development

Planta, 2011

In addition to the starchy endosperm, a specialized tissue accumulating storage material, the end... more In addition to the starchy endosperm, a specialized tissue accumulating storage material, the endosperm of wheat grain, comprises the aleurone layer and the transfer cells next to the crease. The transfer cells, located at the ventral region of the grain, are involved in nutrient transfer from the maternal tissues to the developing endosperm. Immunolabeling techniques, Raman spectroscopy, and synchrotron infrared micro-spectroscopy were used to study the chemistry of the transfer cell walls during wheat grain development. The kinetic depositions of the main cell wall polysaccharides of wheat grain endosperm, arabinoxylan, and (1-3)(1-4)-β-glucan in transfer cell walls were different from kinetics previously observed in the aleurone cell walls. While (1-3)(1-4)-β-glucan appeared first in the aleurone cell walls at 90°D, arabinoxylan predominated in the transfer cell walls from 90 to 445°D. Both aleurone and transfer cell walls were enriched in (1-3)(1-4)-β-glucan at the mature stage of wheat grain development. Arabinoxylan was more substituted in the transfer cell walls than in the aleurone walls. However, arabinoxylan was more feruloylated in the aleurone than in the transfer cell walls, whatever the stage of grain development. In the transfer cells, the ferulic acid was less abundant in the outer periclinal walls while para-coumarate was absent. Possible implications of such differences are discussed.

Research paper thumbnail of Brachypodium distachyon grain: identification and subcellular localization of storage proteins

Journal of Experimental Botany, 2010

Seed storage proteins are of great importance in nutrition and in industrial transformation becau... more Seed storage proteins are of great importance in nutrition and in industrial transformation because of their functional properties. Brachypodium distachyon has been proposed as a new model plant to study temperate cereals. The protein composition of Brachypodium grain was investigated by separating the proteins on the basis of their solubility combined with a proteomic approach. Salt-soluble proteins as well as salt-insoluble proteins separated by two-dimensional gel electrophoresis revealed 284 and 120 spots, respectively. Proteins from the major spots were sequenced by mass spectrometry and identified by searching against a Brachypodium putative protein database. Our analysis detected globulins and prolamins but no albumins. Globulins were represented mainly by the 11S type and their solubility properties corresponded to the glutelin found in rice. An in silico search for storage proteins returned more translated genes than expressed products identified by mass spectrometry, particularly in the case of prolamin type proteins, reflecting a strong expression of globulins at the expense of prolamins. Microscopic examination of endosperm cells revealed scarce small-size starch granules surrounded by protein bodies containing 11S globulins. The presence of protein bodies containing glutelins makes B. distachyon closer to rice or oat than to wheat endosperm.

Research paper thumbnail of Down-regulation of an Auxin Response Factor in the tomato induces modification of fine pectin structure and tissue architecture

Journal of Experimental Botany, 2008

Research paper thumbnail of Microscopical Study of the Destructuring of Waxy Maize and Smooth Pea Starches by Shear and Heat at Low Hydration

Journal of Cereal Science, 2001

Research paper thumbnail of Wheat endosperm cell walls: Spatial heterogeneity of polysaccharide structure and composition using micro-scale enzymatic fingerprinting and FT-IR microspectroscopy

Journal of Cereal Science, 2009

Micro-scale enzymatic fingerprinting and FT-IR microspectroscopy were used to investigate changes... more Micro-scale enzymatic fingerprinting and FT-IR microspectroscopy were used to investigate changes of polysaccharide structure and composition in cell walls from wheat endosperm. These methods were applied to transverse and longitudinal sections of wheat grains harvested at maturity and 270°D. Principal component analysis treatment of the data revealed marked differences in the (1,3)-(1,4)-beta-glucans (BG)/arabinoxylans (AX) ratio and in the structure of

Research paper thumbnail of Individual Contribution of Grain Outer Layers and Their Cell Wall Structure to the Mechanical Properties of Wheat Bran

Journal of Agricultural and Food Chemistry, 2003