Caifeng Zhao - Academia.edu (original) (raw)

Uploads

Papers by Caifeng Zhao

Research paper thumbnail of Pedigree analysis of an elite rice hybrid using proteomic approach

Research paper thumbnail of Proteomic characterization of two snake venoms: Naja naja atra and Agkistrodon halys

Research paper thumbnail of Accounting for protein subcellular localization: A compartmental map of the rat liver proteome

Molecular & cellular proteomics : MCP, Feb 6, 2016

Accurate knowledge of the intracellular location of proteins is important for numerous areas of b... more Accurate knowledge of the intracellular location of proteins is important for numerous areas of biomedical research including assessing fidelity of putative protein-protein interactions, modeling cellular processes at a system-wide level and investigating metabolic and disease pathways. Many proteins have not been localized, or have been incompletely localized, partly because most studies do not account for entire subcellular distribution. Thus, proteins are frequently assigned to one organelle while a significant fraction may reside elsewhere. As a step towards a comprehensive cellular map, we used subcellular fractionation with classic balance sheet analysis and isobaric labeling/quantitative mass spectrometry to assign locations to >6000 rat liver proteins. We provide quantitative data and error estimates describing the distribution of each protein among the eight major cellular compartments: nucleus, mitochondria, lysosomes, peroxisomes, endoplasmic reticulum, Golgi, plasma m...

Research paper thumbnail of The Genomes of Oryza Sativa: a History of Duplications

PLoS …, 2005

We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, bo... more We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested against a nonredundant collection of 19,079 full-length cDNAs, 97.7% of the ...

Research paper thumbnail of Pedigree analysis of an elite rice hybrid using proteomic approach

Research paper thumbnail of Proteomic characterization of two snake venoms: Naja naja atra and Agkistrodon halys

Research paper thumbnail of Accounting for protein subcellular localization: A compartmental map of the rat liver proteome

Molecular & cellular proteomics : MCP, Feb 6, 2016

Accurate knowledge of the intracellular location of proteins is important for numerous areas of b... more Accurate knowledge of the intracellular location of proteins is important for numerous areas of biomedical research including assessing fidelity of putative protein-protein interactions, modeling cellular processes at a system-wide level and investigating metabolic and disease pathways. Many proteins have not been localized, or have been incompletely localized, partly because most studies do not account for entire subcellular distribution. Thus, proteins are frequently assigned to one organelle while a significant fraction may reside elsewhere. As a step towards a comprehensive cellular map, we used subcellular fractionation with classic balance sheet analysis and isobaric labeling/quantitative mass spectrometry to assign locations to >6000 rat liver proteins. We provide quantitative data and error estimates describing the distribution of each protein among the eight major cellular compartments: nucleus, mitochondria, lysosomes, peroxisomes, endoplasmic reticulum, Golgi, plasma m...

Research paper thumbnail of The Genomes of Oryza Sativa: a History of Duplications

PLoS …, 2005

We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, bo... more We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested against a nonredundant collection of 19,079 full-length cDNAs, 97.7% of the ...

Log In